{"id":"https://openalex.org/W2405025637","doi":"https://doi.org/10.1142/s0219720016500219","title":"Reverse engineering of gene regulatory network using restricted gene expression programming","display_name":"Reverse engineering of gene regulatory network using restricted gene expression programming","publication_year":2016,"publication_date":"2016-05-27","ids":{"openalex":"https://openalex.org/W2405025637","doi":"https://doi.org/10.1142/s0219720016500219","mag":"2405025637","pmid":"https://pubmed.ncbi.nlm.nih.gov/27338130"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720016500219","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016500219","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007584947","display_name":"Bin Yang","orcid":"https://orcid.org/0000-0001-6879-7069"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Yang","raw_affiliation_strings":["School of Information Science and Engineering, Zaozhuang University, Zaozhuang 277160, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang 277160, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070169017","display_name":"Sanrong Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sanrong Liu","raw_affiliation_strings":["School of Information Science and Engineering, Zaozhuang University, Zaozhuang 277160, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang 277160, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100441789","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0003-3605-9373"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["School of Information Science and Engineering, Zaozhuang University, Zaozhuang 277160, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang 277160, China","institution_ids":["https://openalex.org/I4210159676"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007584947"],"corresponding_institution_ids":["https://openalex.org/I4210159676"],"apc_list":null,"apc_paid":null,"fwci":0.5002,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.70100676,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"05","first_page":"1650021","last_page":"1650021"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6830359697341919},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6488490700721741},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6231114864349365},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6011196374893188},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5017681121826172},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4992544651031494},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4930514991283417},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.44359666109085083},{"id":"https://openalex.org/keywords/cuckoo-search","display_name":"Cuckoo search","score":0.4377293884754181},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.42704644799232483},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4198821187019348},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.41838937997817993},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4120594561100006},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3997890055179596},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39475634694099426},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37866145372390747},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3657603859901428},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3408236503601074},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24066424369812012}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6830359697341919},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6488490700721741},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6231114864349365},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6011196374893188},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5017681121826172},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4992544651031494},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4930514991283417},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.44359666109085083},{"id":"https://openalex.org/C117241572","wikidata":"https://www.wikidata.org/wiki/Q5192379","display_name":"Cuckoo search","level":3,"score":0.4377293884754181},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.42704644799232483},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4198821187019348},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.41838937997817993},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4120594561100006},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3997890055179596},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39475634694099426},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37866145372390747},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3657603859901428},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3408236503601074},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24066424369812012},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720016500219","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016500219","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:27338130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27338130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320325428","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1501347617","https://openalex.org/W1522641732","https://openalex.org/W1966250206","https://openalex.org/W1970204203","https://openalex.org/W1976177296","https://openalex.org/W1991224261","https://openalex.org/W1996264210","https://openalex.org/W2011835017","https://openalex.org/W2016702324","https://openalex.org/W2033201006","https://openalex.org/W2074489745","https://openalex.org/W2092091227","https://openalex.org/W2100169396","https://openalex.org/W2126874285","https://openalex.org/W2127458423","https://openalex.org/W2138148774","https://openalex.org/W2139038704","https://openalex.org/W2141239733","https://openalex.org/W2144191802","https://openalex.org/W2151098983","https://openalex.org/W2152992255","https://openalex.org/W2169840877","https://openalex.org/W2225394325","https://openalex.org/W3101288326"],"related_works":["https://openalex.org/W2057769265","https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W2338895903","https://openalex.org/W3044523069","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W2211443823","https://openalex.org/W2158714033","https://openalex.org/W4212865750"],"abstract_inverted_index":{"Inference":[0],"of":[1,11,16,31,68,94],"gene":[2,36,42],"regulatory":[3,43],"networks":[4],"has":[5],"been":[6],"becoming":[7],"a":[8,28],"major":[9],"area":[10],"interest":[12],"in":[13,85],"the":[14,20,63,92],"field":[15],"systems":[17],"biology":[18],"over":[19],"past":[21],"decade.":[22],"In":[23],"this":[24],"paper,":[25],"we":[26],"present":[27],"novel":[29],"representation":[30],"S-system":[32],"model,":[33,69],"named":[34],"restricted":[35],"expression":[37],"programming":[38],"(RGEP),":[39],"to":[40,61,90],"infer":[41],"network.":[44],"A":[45],"new":[46],"hybrid":[47],"evolutionary":[48,53],"algorithm":[49,54],"based":[50],"on":[51],"structure-based":[52],"and":[55,65,75],"cuckoo":[56],"search":[57],"(CS)":[58],"is":[59],"proposed":[60,102,108],"optimize":[62],"architecture":[64],"corresponding":[66],"parameters":[67],"respectively.":[70],"Two":[71],"synthetic":[72],"benchmark":[73],"datasets":[74],"one":[76],"real":[77],"biological":[78],"dataset":[79],"from":[80],"SOS":[81],"DNA":[82],"repair":[83],"network":[84],"E.":[86],"coli":[87],"are":[88],"used":[89],"test":[91],"validity":[93],"our":[95,101],"method.":[96],"Experimental":[97],"results":[98],"demonstrate":[99],"that":[100],"method":[103],"performs":[104],"better":[105],"than":[106],"previously":[107],"popular":[109],"methods.":[110]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
