{"id":"https://openalex.org/W2467189061","doi":"https://doi.org/10.1142/s0219720016500207","title":"Metabolic potential of microbial mats and microbialites: Autotrophic capabilities described by an <i>in silico</i> stoichiometric approach from shared genomic resources","display_name":"Metabolic potential of microbial mats and microbialites: Autotrophic capabilities described by an <i>in silico</i> stoichiometric approach from shared genomic resources","publication_year":2016,"publication_date":"2016-06-21","ids":{"openalex":"https://openalex.org/W2467189061","doi":"https://doi.org/10.1142/s0219720016500207","mag":"2467189061","pmid":"https://pubmed.ncbi.nlm.nih.gov/27324427"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720016500207","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016500207","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083226909","display_name":"Daniel Cerqueda\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0003-1544-5662"},"institutions":[{"id":"https://openalex.org/I4210154133","display_name":"Instituto de Ecolog\u00eda","ror":"https://ror.org/03yvabt26","country_code":"MX","type":"facility","lineage":["https://openalex.org/I4210154133"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Daniel Cerqueda-Garc\u00eda","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Instituto de Ecolog\u00eda, Circuito Exterior, Ciudad Universitaria, Distrito Federal 04510, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Instituto de Ecolog\u00eda, Circuito Exterior, Ciudad Universitaria, Distrito Federal 04510, Mexico","institution_ids":["https://openalex.org/I8961855","https://openalex.org/I4210154133"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061293575","display_name":"Luisa I. Falc\u00f3n","orcid":"https://orcid.org/0000-0002-7210-6483"},"institutions":[{"id":"https://openalex.org/I4210154133","display_name":"Instituto de Ecolog\u00eda","ror":"https://ror.org/03yvabt26","country_code":"MX","type":"facility","lineage":["https://openalex.org/I4210154133"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Luisa I. Falc\u00f3n","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Instituto de Ecolog\u00eda, Circuito Exterior, Ciudad Universitaria, Distrito Federal 04510, Mexico"],"raw_orcid":"https://orcid.org/0000-0002-7210-6483","affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Instituto de Ecolog\u00eda, Circuito Exterior, Ciudad Universitaria, Distrito Federal 04510, Mexico","institution_ids":["https://openalex.org/I8961855","https://openalex.org/I4210154133"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5083226909"],"corresponding_institution_ids":["https://openalex.org/I4210154133","https://openalex.org/I8961855"],"apc_list":null,"apc_paid":null,"fwci":0.6973,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.74297914,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"14","issue":"04","first_page":"1650020","last_page":"1650020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/archaea","display_name":"Archaea","score":0.8494653105735779},{"id":"https://openalex.org/keywords/autotroph","display_name":"Autotroph","score":0.7255698442459106},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6540749669075012},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.6326871514320374},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6201281547546387},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5921083688735962},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5721644163131714},{"id":"https://openalex.org/keywords/microbial-mat","display_name":"Microbial mat","score":0.551633894443512},{"id":"https://openalex.org/keywords/microbial-metabolism","display_name":"Microbial metabolism","score":0.5331363677978516},{"id":"https://openalex.org/keywords/phylogenetic-diversity","display_name":"Phylogenetic diversity","score":0.4588731825351715},{"id":"https://openalex.org/keywords/flux-balance-analysis","display_name":"Flux balance analysis","score":0.45196399092674255},{"id":"https://openalex.org/keywords/biogeochemical-cycle","display_name":"Biogeochemical cycle","score":0.42459559440612793},{"id":"https://openalex.org/keywords/carbon-fixation","display_name":"Carbon fixation","score":0.41752544045448303},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.3160446882247925},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.31538376212120056},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3005174398422241},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.23730778694152832},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.20767414569854736},{"id":"https://openalex.org/keywords/cyanobacteria","display_name":"Cyanobacteria","score":0.15556266903877258},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11720457673072815},{"id":"https://openalex.org/keywords/photosynthesis","display_name":"Photosynthesis","score":0.09127649664878845}],"concepts":[{"id":"https://openalex.org/C550995028","wikidata":"https://www.wikidata.org/wiki/Q10872","display_name":"Archaea","level":3,"score":0.8494653105735779},{"id":"https://openalex.org/C104647666","wikidata":"https://www.wikidata.org/wiki/Q131427","display_name":"Autotroph","level":3,"score":0.7255698442459106},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6540749669075012},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.6326871514320374},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6201281547546387},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5921083688735962},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5721644163131714},{"id":"https://openalex.org/C89944131","wikidata":"https://www.wikidata.org/wiki/Q1964349","display_name":"Microbial mat","level":4,"score":0.551633894443512},{"id":"https://openalex.org/C101014631","wikidata":"https://www.wikidata.org/wiki/Q4889568","display_name":"Microbial metabolism","level":3,"score":0.5331363677978516},{"id":"https://openalex.org/C98722961","wikidata":"https://www.wikidata.org/wiki/Q7189436","display_name":"Phylogenetic diversity","level":4,"score":0.4588731825351715},{"id":"https://openalex.org/C167091322","wikidata":"https://www.wikidata.org/wiki/Q5463029","display_name":"Flux balance analysis","level":2,"score":0.45196399092674255},{"id":"https://openalex.org/C71915725","wikidata":"https://www.wikidata.org/wiki/Q846303","display_name":"Biogeochemical cycle","level":2,"score":0.42459559440612793},{"id":"https://openalex.org/C199873434","wikidata":"https://www.wikidata.org/wiki/Q901921","display_name":"Carbon fixation","level":3,"score":0.41752544045448303},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3160446882247925},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.31538376212120056},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3005174398422241},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.23730778694152832},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.20767414569854736},{"id":"https://openalex.org/C2779669040","wikidata":"https://www.wikidata.org/wiki/Q93315","display_name":"Cyanobacteria","level":3,"score":0.15556266903877258},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11720457673072815},{"id":"https://openalex.org/C183688256","wikidata":"https://www.wikidata.org/wiki/Q11982","display_name":"Photosynthesis","level":2,"score":0.09127649664878845},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002245","descriptor_name":"Carbon Dioxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002245","descriptor_name":"Carbon Dioxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002245","descriptor_name":"Carbon Dioxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002952","descriptor_name":"Citric Acid Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002952","descriptor_name":"Citric Acid Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002952","descriptor_name":"Citric Acid Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009584","descriptor_name":"Nitrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009584","descriptor_name":"Nitrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009584","descriptor_name":"Nitrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052818","descriptor_name":"Autotrophic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052818","descriptor_name":"Autotrophic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052818","descriptor_name":"Autotrophic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720016500207","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016500207","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:27324427","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27324427","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W176463851","https://openalex.org/W965551521","https://openalex.org/W1023780653","https://openalex.org/W1498277656","https://openalex.org/W1553552347","https://openalex.org/W1574413295","https://openalex.org/W1736613036","https://openalex.org/W1757722203","https://openalex.org/W1891178352","https://openalex.org/W1963993817","https://openalex.org/W1965663218","https://openalex.org/W1967434028","https://openalex.org/W1969404643","https://openalex.org/W1983202741","https://openalex.org/W1983206417","https://openalex.org/W1984682151","https://openalex.org/W1987490818","https://openalex.org/W1989348205","https://openalex.org/W1991310235","https://openalex.org/W1998767819","https://openalex.org/W2001809426","https://openalex.org/W2005231757","https://openalex.org/W2013646676","https://openalex.org/W2017762456","https://openalex.org/W2025118032","https://openalex.org/W2029058413","https://openalex.org/W2029930600","https://openalex.org/W2037741769","https://openalex.org/W2050666507","https://openalex.org/W2059497349","https://openalex.org/W2064134384","https://openalex.org/W2066698530","https://openalex.org/W2068934337","https://openalex.org/W2083658635","https://openalex.org/W2083752417","https://openalex.org/W2083856235","https://openalex.org/W2086452607","https://openalex.org/W2091465054","https://openalex.org/W2093241068","https://openalex.org/W2094525983","https://openalex.org/W2094650646","https://openalex.org/W2095304455","https://openalex.org/W2096517620","https://openalex.org/W2096522903","https://openalex.org/W2099039198","https://openalex.org/W2110296462","https://openalex.org/W2110355460","https://openalex.org/W2111641799","https://openalex.org/W2112716951","https://openalex.org/W2113256118","https://openalex.org/W2113427692","https://openalex.org/W2116276518","https://openalex.org/W2123134406","https://openalex.org/W2127020923","https://openalex.org/W2131342905","https://openalex.org/W2131848047","https://openalex.org/W2132801908","https://openalex.org/W2136631220","https://openalex.org/W2144885342","https://openalex.org/W2145154988","https://openalex.org/W2146249297","https://openalex.org/W2147514187","https://openalex.org/W2152954594","https://openalex.org/W2155156814","https://openalex.org/W2160304232","https://openalex.org/W2161540657","https://openalex.org/W2164904029","https://openalex.org/W2165146196","https://openalex.org/W2168546639","https://openalex.org/W2169217971","https://openalex.org/W2169306900","https://openalex.org/W2170460700","https://openalex.org/W2171229333","https://openalex.org/W2171866573","https://openalex.org/W2172057173","https://openalex.org/W2180842927","https://openalex.org/W3103786587"],"related_works":["https://openalex.org/W1999460937","https://openalex.org/W2083413061","https://openalex.org/W1984242440","https://openalex.org/W2341681417","https://openalex.org/W2113329733","https://openalex.org/W1983989854","https://openalex.org/W2070388085","https://openalex.org/W2886446279","https://openalex.org/W832244386","https://openalex.org/W2978188190"],"abstract_inverted_index":{"Microbialites":[0],"and":[1,18,28,47,52,74,120,175,189,200],"microbial":[2,50,187],"mats":[3,51,188],"are":[4,13,21,191],"complex":[5],"communities":[6,12],"with":[7],"high":[8,163],"phylogenetic":[9],"diversity.":[10],"These":[11],"mostly":[14],"composed":[15],"of":[16,44,72,109,124,138,156,165,179,197,202],"bacteria":[17],"archaea,":[19,129],"which":[20],"the":[22,38,70,77,96,107,134,141,157,166,177,195],"earliest":[23],"living":[24],"forms":[25],"on":[26,55],"Earth":[27],"relevant":[29,104],"to":[30,68,76,140,146,149,170],"biogeochemical":[31],"evolution.":[32],"In":[33],"this":[34],"study,":[35],"we":[36],"identified":[37],"shared":[39],"metabolic":[40,144,173],"pathways":[41,65,105,168],"for":[42,63,106,194],"uptake":[43],"inorganic":[45,198],"C":[46,73],"N":[48,75,139],"in":[49,60,87,128],"microbialites":[53,190],"based":[54],"metagenomic":[56],"data":[57],"sets.":[58],"An":[59],"silico":[61],"analysis":[62,184],"autotrophic":[64,167],"was":[66,93,133,151,159],"used":[67],"trace":[69],"paths":[71],"system,":[78],"following":[79],"an":[80],"elementary":[81],"flux":[82],"modes":[83],"(EFM)":[84],"approach,":[85],"resulting":[86],"a":[88,162],"stoichiometric":[89],"model.":[90],"The":[91,143,154],"fragility":[92,155],"analyzed":[94],"by":[95],"minimal":[97],"cut":[98],"sets":[99],"method.":[100],"We":[101],"found":[102],"four":[103],"incorporation":[108,196],"CO2":[110],"(Calvin":[111],"cycle,":[112,116],"reverse":[113],"tricarboxylic":[114],"acid":[115],"reductive":[117],"acetyl-CoA":[118],"pathway,":[119],"dicarboxylate/4-hydroxybutyrate":[121],"cycle),":[122],"some":[123],"them":[125],"present":[126],"only":[127],"while":[130],"nitrogen":[131],"fixation":[132],"most":[135],"important":[136],"source":[137],"system.":[142],"potential":[145],"incorporate":[147],"nitrate":[148],"biomass":[150],"also":[152],"relevant.":[153],"network":[158],"low,":[160],"suggesting":[161],"redundancy":[164],"due":[169],"their":[171],"broad":[172],"diversity,":[174],"highlighting":[176],"relevance":[178],"reducing":[180],"power":[181],"source.":[182],"This":[183],"suggests":[185],"that":[186],"\"metabolic":[192],"pumps\"":[193],"gases":[199],"formation":[201],"organic":[203],"matter.":[204]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-07-22T00:00:00"}
