{"id":"https://openalex.org/W2344448545","doi":"https://doi.org/10.1142/s0219720016500190","title":"A novel Arg H52/Tyr H33 conservative motif in antibodies: A correlation between sequence of antibodies and antigen binding","display_name":"A novel Arg H52/Tyr H33 conservative motif in antibodies: A correlation between sequence of antibodies and antigen binding","publication_year":2016,"publication_date":"2016-04-26","ids":{"openalex":"https://openalex.org/W2344448545","doi":"https://doi.org/10.1142/s0219720016500190","mag":"2344448545","pmid":"https://pubmed.ncbi.nlm.nih.gov/27452033"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720016500190","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016500190","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079475121","display_name":"Artem Petrov","orcid":"https://orcid.org/0000-0002-1238-3745"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Artem Petrov","raw_affiliation_strings":["Kolmogorov Advanced Educational Scientific Center, Lomonosov Moscow State University, Kremenchugskaya st., 11, Moscow, 121357, Russia"],"affiliations":[{"raw_affiliation_string":"Kolmogorov Advanced Educational Scientific Center, Lomonosov Moscow State University, Kremenchugskaya st., 11, Moscow, 121357, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035769853","display_name":"Vladimir K. Arzhanik","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Vladimir Arzhanik","raw_affiliation_strings":["Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, LenGory, 1, b.73, Moscow, 119991, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, LenGory, 1, b.73, Moscow, 119991, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052946130","display_name":"G. I. Makarov","orcid":"https://orcid.org/0000-0002-4533-9572"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Gennady Makarov","raw_affiliation_strings":["Department of Chemistry, Lomonosov Moscow State University, LenGory, 1, b.3, Moscow, 119991, Russia"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Lomonosov Moscow State University, LenGory, 1, b.3, Moscow, 119991, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042733313","display_name":"\u041e. \u0412. \u041a\u043e\u043b\u044f\u0441\u043d\u0438\u043a\u043e\u0432","orcid":"https://orcid.org/0000-0002-3850-5106"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Oleg Koliasnikov","raw_affiliation_strings":["Kolmogorov Advanced Educational Scientific Center, Lomonosov Moscow State University, Kremenchugskaya st., 11, Moscow, 121357, Russia"],"affiliations":[{"raw_affiliation_string":"Kolmogorov Advanced Educational Scientific Center, Lomonosov Moscow State University, Kremenchugskaya st., 11, Moscow, 121357, Russia","institution_ids":["https://openalex.org/I19880235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5079475121"],"corresponding_institution_ids":["https://openalex.org/I19880235"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04879633,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":"04","first_page":"1650019","last_page":"1650019"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11660","display_name":"Blood groups and transfusion","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.6385372877120972},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6345378160476685},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5032183527946472},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48027610778808594},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.4790536165237427},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.46540147066116333},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.379076212644577},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37852999567985535},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37267109751701355},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25311553478240967},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1429036259651184},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10103216767311096}],"concepts":[{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.6385372877120972},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6345378160476685},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5032183527946472},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48027610778808594},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.4790536165237427},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.46540147066116333},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.379076212644577},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37852999567985535},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37267109751701355},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25311553478240967},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1429036259651184},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10103216767311096},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001120","descriptor_name":"Arginine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001120","descriptor_name":"Arginine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001120","descriptor_name":"Arginine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014443","descriptor_name":"Tyrosine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014443","descriptor_name":"Tyrosine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014443","descriptor_name":"Tyrosine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720016500190","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016500190","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:27452033","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27452033","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310638","display_name":"McGill University","ror":"https://ror.org/01pxwe438"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W201295504","https://openalex.org/W1541258411","https://openalex.org/W1554255186","https://openalex.org/W1966078827","https://openalex.org/W1976499671","https://openalex.org/W1980022131","https://openalex.org/W1982679430","https://openalex.org/W1997311863","https://openalex.org/W1998608400","https://openalex.org/W1999271199","https://openalex.org/W2007054796","https://openalex.org/W2035266068","https://openalex.org/W2044098466","https://openalex.org/W2057477511","https://openalex.org/W2058515865","https://openalex.org/W2067174909","https://openalex.org/W2069123478","https://openalex.org/W2104630883","https://openalex.org/W2110505462","https://openalex.org/W2120772351","https://openalex.org/W2122104381","https://openalex.org/W2127322768","https://openalex.org/W2130393856","https://openalex.org/W2130479394","https://openalex.org/W2131825669","https://openalex.org/W2149923526","https://openalex.org/W2153046593"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2159636084","https://openalex.org/W2610941444","https://openalex.org/W2117168988","https://openalex.org/W2154430121","https://openalex.org/W2103777723"],"abstract_inverted_index":{"Antibodies":[0],"are":[1,7,76,98],"the":[2,37,40,52,55,80,95,120,135,148],"family":[3],"of":[4,15,44,54,62,94,107,115,119,127,137,147],"proteins,":[5],"which":[6,60],"responsible":[8],"for":[9,143],"antigen":[10,19],"recognition.":[11],"The":[12,92,125],"computational":[13,138],"modeling":[14,141],"interaction":[16,101,116,140],"between":[17,39],"an":[18,21],"and":[20,46,71,83,109,117,142],"antibody":[22,45],"is":[23,29],"very":[24],"important":[25],"when":[26],"crystallographic":[27],"structure":[28],"unavailable.":[30],"In":[31],"this":[32,128],"research,":[33],"we":[34],"have":[35],"discovered":[36],"correlation":[38],"amino":[41],"acid":[42],"sequence":[43],"its":[47],"specific":[48,90],"binding":[49,58,81,96,112],"characteristics":[50,118],"on":[51],"example":[53],"novel":[56],"conservative":[57],"motif,":[59],"consists":[61],"four":[63],"residues:":[64],"Arg":[65],"H52,":[66],"Tyr":[67],"H33,":[68],"Thr":[69],"H59,":[70],"Glu":[72],"H61.":[73],"These":[74],"residues":[75,93],"specifically":[77],"oriented":[78],"in":[79,88,100],"site":[82],"interact":[84],"with":[85,103],"each":[86],"other":[87],"a":[89,111],"manner.":[91],"motif":[97],"involved":[99],"strictly":[102],"negatively":[104],"charged":[105],"groups":[106],"antigens,":[108],"form":[110],"complex.":[113],"Mechanism":[114],"complex":[121],"were":[122],"also":[123],"discovered.":[124],"results":[126],"research":[129],"can":[130],"be":[131],"used":[132],"to":[133],"increase":[134],"accuracy":[136],"antibody-antigen":[139],"post-modeling":[144],"quality":[145],"control":[146],"modeled":[149],"structures.":[150]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
