{"id":"https://openalex.org/W2326118664","doi":"https://doi.org/10.1142/s021972001650013x","title":"NES-REBS: A novel nuclear export signal prediction method using regular expressions and biochemical properties","display_name":"NES-REBS: A novel nuclear export signal prediction method using regular expressions and biochemical properties","publication_year":2016,"publication_date":"2016-04-07","ids":{"openalex":"https://openalex.org/W2326118664","doi":"https://doi.org/10.1142/s021972001650013x","mag":"2326118664","pmid":"https://pubmed.ncbi.nlm.nih.gov/27225342"},"language":"en","primary_location":{"id":"doi:10.1142/s021972001650013x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972001650013x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064852381","display_name":"Tingfang Wu","orcid":"https://orcid.org/0000-0001-8137-2436"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tingfang Wu","raw_affiliation_strings":["School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100333854","display_name":"Xun Wang","orcid":"https://orcid.org/0000-0002-2741-433X"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xun Wang","raw_affiliation_strings":["College of Computer and Communication Engineering, China University of Petroleum, Qingdao 266580, Shandong, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"College of Computer and Communication Engineering, China University of Petroleum, Qingdao 266580, Shandong, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100459136","display_name":"Zheng Zhang","orcid":"https://orcid.org/0000-0002-6954-8790"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Zhang","raw_affiliation_strings":["School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101635285","display_name":"Faming Gong","orcid":"https://orcid.org/0000-0001-9127-8558"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Faming Gong","raw_affiliation_strings":["College of Computer and Communication Engineering, China University of Petroleum, Qingdao 266580, Shandong, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"College of Computer and Communication Engineering, China University of Petroleum, Qingdao 266580, Shandong, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006420025","display_name":"Tao Song","orcid":"https://orcid.org/0000-0002-0130-3340"},"institutions":[{"id":"https://openalex.org/I96413208","display_name":"Swinburne University of Technology Sarawak Campus","ror":"https://ror.org/014cjmc76","country_code":"MY","type":"education","lineage":["https://openalex.org/I57093077","https://openalex.org/I96413208"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN","MY"],"is_corresponding":false,"raw_author_name":"Tao Song","raw_affiliation_strings":["College of Computer and Communication Engineering, China University of Petroleum, Qingdao 266580, Shandong, P.\u00a0R.\u00a0China","Faculty of Engineering, Computing and Science Swinburne University of Technology, Sarawak Campus Kuching 93350, Malaysia"],"affiliations":[{"raw_affiliation_string":"College of Computer and Communication Engineering, China University of Petroleum, Qingdao 266580, Shandong, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"Faculty of Engineering, Computing and Science Swinburne University of Technology, Sarawak Campus Kuching 93350, Malaysia","institution_ids":["https://openalex.org/I96413208"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113434075","display_name":"Zhihua Chen","orcid":"https://orcid.org/0000-0003-1455-674X"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihua Chen","raw_affiliation_strings":["School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406363","display_name":"Pan Zhang","orcid":"https://orcid.org/0000-0003-3447-6640"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pan Zhang","raw_affiliation_strings":["School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100653859","display_name":"Yang Zhao","orcid":"https://orcid.org/0000-0001-9318-5371"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Zhao","raw_affiliation_strings":["School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, P.\u00a0R.\u00a0China","institution_ids":["https://openalex.org/I47720641"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5064852381"],"corresponding_institution_ids":["https://openalex.org/I47720641"],"apc_list":null,"apc_paid":null,"fwci":0.5002,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.69720546,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"14","issue":"03","first_page":"1650013","last_page":"1650013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6981475949287415},{"id":"https://openalex.org/keywords/nuclear-export-signal","display_name":"Nuclear export signal","score":0.6900893449783325},{"id":"https://openalex.org/keywords/signal","display_name":"SIGNAL (programming language)","score":0.5407884120941162},{"id":"https://openalex.org/keywords/nuclear-localization-sequence","display_name":"Nuclear localization sequence","score":0.49306556582450867},{"id":"https://openalex.org/keywords/peering","display_name":"Peering","score":0.47935038805007935},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4752870798110962},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4211828112602234},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40131932497024536},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3239233195781708},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24204009771347046},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21769803762435913},{"id":"https://openalex.org/keywords/cell-nucleus","display_name":"Cell nucleus","score":0.11740222573280334},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11579909920692444},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10803297162055969}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6981475949287415},{"id":"https://openalex.org/C54757728","wikidata":"https://www.wikidata.org/wiki/Q3511067","display_name":"Nuclear export signal","level":4,"score":0.6900893449783325},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.5407884120941162},{"id":"https://openalex.org/C49805395","wikidata":"https://www.wikidata.org/wiki/Q910966","display_name":"Nuclear localization sequence","level":3,"score":0.49306556582450867},{"id":"https://openalex.org/C95981142","wikidata":"https://www.wikidata.org/wiki/Q772532","display_name":"Peering","level":3,"score":0.47935038805007935},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4752870798110962},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4211828112602234},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40131932497024536},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3239233195781708},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24204009771347046},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21769803762435913},{"id":"https://openalex.org/C2780114586","wikidata":"https://www.wikidata.org/wiki/Q40260","display_name":"Cell nucleus","level":3,"score":0.11740222573280334},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11579909920692444},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10803297162055969},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049790","descriptor_name":"Nuclear Export Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049790","descriptor_name":"Nuclear Export Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049790","descriptor_name":"Nuclear Export Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1142/s021972001650013x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972001650013x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:27225342","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27225342","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:researchbank.swinburne.edu.au:df09f351-291d-401b-94b8-0639ea30f385/1","is_oa":false,"landing_page_url":"http://hdl.handle.net/1959.3/421738","pdf_url":null,"source":{"id":"https://openalex.org/S4306401157","display_name":"Swinburne Research Bank (Swinburne University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I57093077","host_organization_name":"Swinburne University of Technology","host_organization_lineage":["https://openalex.org/I57093077"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Bioinformatics and Computational Biology, Vol. 14, no. 3 (Jun 2016), article no. 1650013","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4665564789","display_name":null,"funder_award_id":"61370105, 61272071, 61402187, 61572522 and 61572523, 61502535","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321883","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1175789168","https://openalex.org/W1494484168","https://openalex.org/W1574783410","https://openalex.org/W1612034467","https://openalex.org/W1833634424","https://openalex.org/W1963705823","https://openalex.org/W1966528152","https://openalex.org/W1969932442","https://openalex.org/W1971961101","https://openalex.org/W1982251999","https://openalex.org/W1984027585","https://openalex.org/W1986509283","https://openalex.org/W1994352963","https://openalex.org/W2002197988","https://openalex.org/W2008922773","https://openalex.org/W2009470087","https://openalex.org/W2013734705","https://openalex.org/W2017307629","https://openalex.org/W2022455444","https://openalex.org/W2028411636","https://openalex.org/W2028930390","https://openalex.org/W2032007066","https://openalex.org/W2041877620","https://openalex.org/W2042583062","https://openalex.org/W2043816461","https://openalex.org/W2044568075","https://openalex.org/W2056144141","https://openalex.org/W2057810108","https://openalex.org/W2061881231","https://openalex.org/W2072661909","https://openalex.org/W2087430029","https://openalex.org/W2093177921","https://openalex.org/W2099886875","https://openalex.org/W2104804534","https://openalex.org/W2105544978","https://openalex.org/W2107441346","https://openalex.org/W2119483030","https://openalex.org/W2123525093","https://openalex.org/W2124886189","https://openalex.org/W2125079066","https://openalex.org/W2142762027","https://openalex.org/W2143593035","https://openalex.org/W2144781426","https://openalex.org/W2147660582","https://openalex.org/W2158266834","https://openalex.org/W2168319336","https://openalex.org/W2170527607","https://openalex.org/W2258129851","https://openalex.org/W2320801221","https://openalex.org/W2325795218","https://openalex.org/W4236354716"],"related_works":["https://openalex.org/W1547109494","https://openalex.org/W1975261879","https://openalex.org/W2931067402","https://openalex.org/W2039415210","https://openalex.org/W1897999087","https://openalex.org/W2044382442","https://openalex.org/W2401952960","https://openalex.org/W4246929307","https://openalex.org/W2105517676","https://openalex.org/W1967179182"],"abstract_inverted_index":{"A":[0],"nuclear":[1,19],"export":[2,20],"signal":[3],"(NES)":[4],"is":[5,11,149],"a":[6,96],"protein":[7,41,106,146],"localization":[8,26],"signal,":[9],"which":[10],"involved":[12],"in":[13,154],"binding":[14],"of":[15,27,32,59,111],"cargo":[16],"proteins":[17],"to":[18,24,37,55,63,102,123],"receptor,":[21],"thus":[22],"contributes":[23],"regulate":[25],"cellular":[28],"proteins.":[29],"Consensus":[30],"sequences":[31],"NES":[33,39,62,65,83,104,125,142],"have":[34],"been":[35],"used":[36],"detect":[38],"from":[40,45,105,143],"sequences,":[42,107],"but":[43,74],"suffer":[44],"poor":[46],"predictive":[47],"power.":[48],"Some":[49],"recent":[50],"peering":[51],"works":[52],"were":[53],"proposed":[54],"use":[56],"biochemical":[57,109],"properties":[58,88,110],"experimental":[60,112,140],"verified":[61,113,141],"refine":[64,124],"candidates.":[66],"Those":[67],"methods":[68],"can":[69],"achieve":[70],"high":[71],"prediction":[72],"rates,":[73],"their":[75],"execution":[76],"time":[77],"will":[78],"become":[79],"unacceptable":[80],"for":[81],"large-scale":[82],"searching":[84,138],"if":[85],"too":[86],"much":[87],"are":[89,121],"involved.":[90],"In":[91],"this":[92],"work,":[93],"we":[94],"developed":[95],"novel":[97],"computational":[98],"approach,":[99],"named":[100],"NES-REBS,":[101],"search":[103],"where":[108],"NES,":[114],"including":[115],"secondary":[116],"structure":[117],"and":[118,158,166],"surface":[119],"accessibility,":[120],"utilized":[122],"candidates":[126],"obtained":[127,150],"by":[128,137,161],"matching":[129],"popular":[130],"consensus":[131],"sequences.":[132,147],"We":[133],"test":[134],"our":[135],"method":[136],"262":[139],"221":[144],"NES-containing":[145],"It":[148],"that":[151],"NES-REBS":[152],"runs":[153],"2-3[Formula:":[155],"see":[156],"text]mins":[157],"performs":[159],"well":[160],"achieving":[162],"precision":[163],"rate":[164],"47.2%":[165],"sensitivity":[167],"54.6%.":[168]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
