{"id":"https://openalex.org/W2512496687","doi":"https://doi.org/10.1142/s0219720016440029","title":"Information theoretic sub-network mining characterizes breast cancer subtypes in terms of cancer core mechanisms","display_name":"Information theoretic sub-network mining characterizes breast cancer subtypes in terms of cancer core mechanisms","publication_year":2016,"publication_date":"2016-08-29","ids":{"openalex":"https://openalex.org/W2512496687","doi":"https://doi.org/10.1142/s0219720016440029","mag":"2512496687","pmid":"https://pubmed.ncbi.nlm.nih.gov/27712195"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720016440029","is_oa":true,"landing_page_url":"https://doi.org/10.1142/s0219720016440029","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1142/s0219720016440029","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100330093","display_name":"Jinwoo Park","orcid":"https://orcid.org/0000-0002-8544-1643"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinwoo Park","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110414603","display_name":"Benjamin Hur","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Benjamin Hur","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006924677","display_name":"Sung-Min Rhee","orcid":"https://orcid.org/0000-0002-7087-4219"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sungmin Rhee","raw_affiliation_strings":["Department of Computer Science and Engineering, Seoul National University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101655230","display_name":"Sangsoo Lim","orcid":"https://orcid.org/0000-0003-1737-6242"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sangsoo Lim","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103250279","display_name":"Minsu Kim","orcid":"https://orcid.org/0000-0002-2418-5535"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Min-Su Kim","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100443628","display_name":"Kwangsoo Kim","orcid":"https://orcid.org/0000-0002-4586-5062"},"institutions":[{"id":"https://openalex.org/I2802835388","display_name":"Seoul National University Hospital","ror":"https://ror.org/01z4nnt86","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I139264467","https://openalex.org/I2802835388"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kwangsoo Kim","raw_affiliation_strings":["Division of Clinical Bioinformatics, Seoul National University Hospital, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Division of Clinical Bioinformatics, Seoul National University Hospital, Seoul, Korea","institution_ids":["https://openalex.org/I2802835388"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005022842","display_name":"Wonshik Han","orcid":"https://orcid.org/0000-0001-7310-0764"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Wonshik Han","raw_affiliation_strings":["Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea","Department of Surgery, Seoul National University College of Medicine, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Surgery, Seoul National University College of Medicine, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100460439","display_name":"\ufeffSun Kim","orcid":"https://orcid.org/0000-0001-5385-9546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sun Kim","raw_affiliation_strings":["Bioinformatics Institute, Seoul National University, Seoul, Korea","Department of Computer Science and Engineering, Seoul National University, Seoul, Korea","Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5100460439"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":null,"apc_paid":null,"fwci":0.1667,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63365294,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"14","issue":"05","first_page":"1644002","last_page":"1644002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.8411247134208679},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6519854664802551},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6093479990959167},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.5519044399261475},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5038039088249207},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4879104793071747},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.48018398880958557},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.43272602558135986},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36523711681365967},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2782202363014221},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20054712891578674}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.8411247134208679},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6519854664802551},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6093479990959167},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.5519044399261475},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5038039088249207},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4879104793071747},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.48018398880958557},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.43272602558135986},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36523711681365967},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2782202363014221},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20054712891578674}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720016440029","is_oa":true,"landing_page_url":"https://doi.org/10.1142/s0219720016440029","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:27712195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27712195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":{"id":"doi:10.1142/s0219720016440029","is_oa":true,"landing_page_url":"https://doi.org/10.1142/s0219720016440029","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6000000238418579,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1544851750","https://openalex.org/W1808567889","https://openalex.org/W1961978963","https://openalex.org/W1969955808","https://openalex.org/W1972863280","https://openalex.org/W1984914501","https://openalex.org/W1994742171","https://openalex.org/W1995068068","https://openalex.org/W1996322147","https://openalex.org/W2005895632","https://openalex.org/W2021324543","https://openalex.org/W2028137921","https://openalex.org/W2034269086","https://openalex.org/W2039071997","https://openalex.org/W2042933379","https://openalex.org/W2043409879","https://openalex.org/W2045909049","https://openalex.org/W2050869737","https://openalex.org/W2053040123","https://openalex.org/W2057272791","https://openalex.org/W2070620267","https://openalex.org/W2074465378","https://openalex.org/W2078554498","https://openalex.org/W2083158919","https://openalex.org/W2083381199","https://openalex.org/W2084602777","https://openalex.org/W2092050888","https://openalex.org/W2094127881","https://openalex.org/W2096283457","https://openalex.org/W2097255042","https://openalex.org/W2100714130","https://openalex.org/W2101164480","https://openalex.org/W2105717378","https://openalex.org/W2106292881","https://openalex.org/W2117692326","https://openalex.org/W2124007301","https://openalex.org/W2131900960","https://openalex.org/W2131994307","https://openalex.org/W2132619562","https://openalex.org/W2133010239","https://openalex.org/W2133990480","https://openalex.org/W2135548733","https://openalex.org/W2139324860","https://openalex.org/W2143314596","https://openalex.org/W2146390965","https://openalex.org/W2149785901","https://openalex.org/W2154947819","https://openalex.org/W2157581457","https://openalex.org/W2157840751","https://openalex.org/W2158794266","https://openalex.org/W2163129204","https://openalex.org/W2166179777","https://openalex.org/W2166898290","https://openalex.org/W2170552969","https://openalex.org/W2290195878","https://openalex.org/W2429291696","https://openalex.org/W3101634756","https://openalex.org/W4252676770"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W2062945643","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W2330252996","https://openalex.org/W3144241576","https://openalex.org/W2113725788","https://openalex.org/W1988174701","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"A":[0],"breast":[1,33,59,79,92,142,175,201],"cancer":[2,22,34,40,60,66,80,93,98,138,143,159,176,202],"subtype":[3,177],"classification":[4,178],"scheme,":[5],"PAM50,":[6],"based":[7],"on":[8],"genetic":[9],"information":[10,105],"is":[11,53,100,205],"widely":[12],"accepted":[13],"for":[14],"clinical":[15],"applications.":[16],"On":[17],"the":[18,30,37,46,58,65,76,89,137,172,211],"other":[19],"hands,":[20],"experimental":[21,208],"biology":[23],"studies":[24,71,209],"have":[25,41],"been":[26,42],"successful":[27],"in":[28,95,210],"revealing":[29],"mechanisms":[31,48],"of":[32,39,49,78,97,128,136,174,182,192],"and":[35,113,131,195],"now":[36],"hallmarks":[38,77,99],"determined":[43],"to":[44,55,64,74,153,158,180],"explain":[45,88],"core":[47,67,160],"tumorigenesis.":[50],"Thus,":[51],"it":[52],"important":[54],"understand":[56],"how":[57],"subtypes":[61,94],"are":[62,72],"related":[63],"mechanisms,":[68],"but":[69],"multiple":[70],"yet":[73],"address":[75],"subtypes.":[81],"Therefore,":[82],"a":[83,123,189],"new":[84],"approach":[85,150],"that":[86,117,148,156,181,199],"can":[87],"differences":[90],"among":[91],"terms":[96],"needed.":[101],"We":[102],"developed":[103],"an":[104],"theoretic":[106],"sub-network":[107,112],"mining":[108,122],"algorithm,":[109],"differentially":[110],"expressed":[111],"pathway":[114],"analysis":[115],"(DeSPA),":[116],"retrieves":[118],"tumor-related":[119],"genes":[120,155,198],"by":[121,207],"gene":[124],"regulatory":[125,190],"network":[126,191],"(GRN)":[127],"transcription":[129],"factors":[130],"miRNAs.":[132],"With":[133],"extensive":[134],"experiments":[135],"genome":[139],"atlas":[140],"(TCGA)":[141],"sequencing":[144],"data,":[145],"we":[146],"showed":[147],"our":[149,186],"was":[151],"able":[152],"select":[154],"belong":[157],"pathways":[161,169],"such":[162],"as":[163],"DNA":[164],"replication,":[165],"cell":[166],"cycle,":[167],"p53":[168],"while":[170],"keeping":[171],"accuracy":[173],"comparable":[179],"PAM50.":[183],"In":[184],"addition,":[185],"method":[187],"produces":[188],"TF,":[193],"miRNA,":[194],"their":[196],"target":[197],"distinguish":[200],"subtypes,":[203],"which":[204],"confirmed":[206],"literature.":[212]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
