{"id":"https://openalex.org/W2284418265","doi":"https://doi.org/10.1142/s0219720016430010","title":"PSRna: Prediction of small RNA secondary structures based on reverse complementary folding method","display_name":"PSRna: Prediction of small RNA secondary structures based on reverse complementary folding method","publication_year":2016,"publication_date":"2016-02-18","ids":{"openalex":"https://openalex.org/W2284418265","doi":"https://doi.org/10.1142/s0219720016430010","mag":"2284418265","pmid":"https://pubmed.ncbi.nlm.nih.gov/27045556"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720016430010","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016430010","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100764366","display_name":"Jin Li","orcid":"https://orcid.org/0000-0002-6033-0381"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Li","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075354732","display_name":"Chengzhen Xu","orcid":"https://orcid.org/0000-0003-3458-9493"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengzhen Xu","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100435960","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5859-2526"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070734136","display_name":"Hong Liang","orcid":"https://orcid.org/0000-0002-2590-7210"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Liang","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102953680","display_name":"Weixing Feng","orcid":"https://orcid.org/0000-0002-6466-7918"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weixing Feng","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068880146","display_name":"Zhongxi Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongxi Cai","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100707081","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0002-3193-5912"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wang Cong","orcid":null},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wang Cong","raw_affiliation_strings":["College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100337355","display_name":"Yunlong Liu","orcid":"https://orcid.org/0000-0002-2699-626X"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yunlong Liu","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 410 West 10th Street, Suite 5000, Indianapolis, IN 46202, USA","College of Automation, Harbin Engineering University, Harbin, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 410 West 10th Street, Suite 5000, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"College of Automation, Harbin Engineering University, Harbin, P. R. China","institution_ids":["https://openalex.org/I151727225"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100337355"],"corresponding_institution_ids":["https://openalex.org/I151727225","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":null,"apc_paid":null,"fwci":0.1603,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.608589,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"14","issue":"04","first_page":"1643001","last_page":"1643001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.7834216952323914},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.7367663979530334},{"id":"https://openalex.org/keywords/backtracking","display_name":"Backtracking","score":0.7159196138381958},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6520246267318726},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.6495462656021118},{"id":"https://openalex.org/keywords/matthews-correlation-coefficient","display_name":"Matthews correlation coefficient","score":0.6182327270507812},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5049548745155334},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5012197494506836},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.431282639503479},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.42649444937705994},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4029068648815155},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3894937038421631},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3652305006980896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19530808925628662},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18231943249702454},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09143748879432678},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08639782667160034},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08551651239395142}],"concepts":[{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.7834216952323914},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.7367663979530334},{"id":"https://openalex.org/C156884757","wikidata":"https://www.wikidata.org/wiki/Q798554","display_name":"Backtracking","level":2,"score":0.7159196138381958},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6520246267318726},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.6495462656021118},{"id":"https://openalex.org/C164085508","wikidata":"https://www.wikidata.org/wiki/Q4811327","display_name":"Matthews correlation coefficient","level":3,"score":0.6182327270507812},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5049548745155334},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5012197494506836},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.431282639503479},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.42649444937705994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4029068648815155},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3894937038421631},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3652305006980896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19530808925628662},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18231943249702454},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09143748879432678},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08639782667160034},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08551651239395142},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720016430010","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720016430010","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:27045556","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27045556","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8700000047683716}],"awards":[{"id":"https://openalex.org/G4860055548","display_name":null,"funder_award_id":"HEUCFX41303","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G563229854","display_name":null,"funder_award_id":"HEUCFT1102","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7592937411","display_name":null,"funder_award_id":"HEUCFT1302","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8168244614","display_name":null,"funder_award_id":"HEUCFT1102, HEUCFT1302, HEUCFX41303","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8367862733","display_name":null,"funder_award_id":"61471139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G900122319","display_name":null,"funder_award_id":"2012YQ04014010","funder_id":"https://openalex.org/F4320335765","funder_display_name":"National Key Scientific Instrument and Equipment Development Projects of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335765","display_name":"National Key Scientific Instrument and Equipment Development Projects of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1549578015","https://openalex.org/W1585306636","https://openalex.org/W1701272600","https://openalex.org/W1878690996","https://openalex.org/W1966857768","https://openalex.org/W1979988863","https://openalex.org/W2005432294","https://openalex.org/W2006257929","https://openalex.org/W2008450014","https://openalex.org/W2012697921","https://openalex.org/W2018216725","https://openalex.org/W2025763720","https://openalex.org/W2030521870","https://openalex.org/W2037656655","https://openalex.org/W2038166314","https://openalex.org/W2046208971","https://openalex.org/W2054931730","https://openalex.org/W2068577315","https://openalex.org/W2087001748","https://openalex.org/W2103250001","https://openalex.org/W2107432340","https://openalex.org/W2112335007","https://openalex.org/W2127314967","https://openalex.org/W2128109027","https://openalex.org/W2137076005","https://openalex.org/W2141157874","https://openalex.org/W2155544170","https://openalex.org/W2164538298","https://openalex.org/W2168230240","https://openalex.org/W2327806745","https://openalex.org/W2377137004","https://openalex.org/W2970966356"],"related_works":["https://openalex.org/W1975806245","https://openalex.org/W2558432341","https://openalex.org/W3047450301","https://openalex.org/W2345156963","https://openalex.org/W1971402940","https://openalex.org/W2919479895","https://openalex.org/W2131054067","https://openalex.org/W3196523453","https://openalex.org/W2021868453","https://openalex.org/W2284418265"],"abstract_inverted_index":{"Prediction":[0],"of":[1,23,45,68,91,94,189],"RNA":[2,15,24,28,95,141],"secondary":[3,16,29,43,58,96,134,142,154,166],"structures":[4,17,30,44,59,97,143],"is":[5,108,178],"an":[6,51],"important":[7],"problem":[8],"in":[9,187],"computational":[10],"biology":[11],"and":[12,33,64,79,104,128,185,192],"bioinformatics,":[13],"since":[14],"are":[18,31,118,144],"fundamental":[19],"for":[20,40,55],"functional":[21],"analysis":[22],"molecules.":[25],"However,":[26],"small":[27,46,69],"scarce":[32],"few":[34],"algorithms":[35,73],"have":[36],"been":[37],"specifically":[38],"designed":[39],"predicting":[41,56],"the":[42,88,100,111,115,121,139,153,157,164,175],"RNAs.":[47,70],"Here":[48],"we":[49],"propose":[50],"algorithm":[52,103,177],"named":[53],"\"PSRna\"":[54],"small-RNA":[57],"using":[60],"reverse":[61],"complementary":[62],"folding":[63],"characteristic":[65],"hairpin":[66],"loops":[67,78],"Unlike":[71],"traditional":[72],"that":[74,174],"usually":[75],"generate":[76],"multi-branch":[77],"5[Formula:":[80],"see":[81],"text]":[82],"end":[83],"self-folding,":[84],"PSRna":[85],"first":[86],"estimated":[87],"maximum":[89],"number":[90],"base":[92],"pairs":[93],"based":[98,124,146],"on":[99,125,147,170],"dynamic":[101],"programming":[102],"a":[105,133],"path":[106,122,131],"matrix":[107,123],"constructed":[109],"at":[110],"same":[112],"time.":[113],"Second,":[114],"backtracking":[116,126,130],"paths":[117],"extracted":[119],"from":[120],"algorithm,":[127],"each":[129],"represents":[132],"structure.":[135,167],"To":[136],"improve":[137],"accuracy,":[138],"predicted":[140],"filtered":[145],"their":[148],"free":[149,159],"energy,":[150],"where":[151],"only":[152],"structure":[155],"with":[156],"minimum":[158],"energy":[160],"was":[161],"identified":[162],"as":[163],"candidate":[165],"Our":[168],"experiments":[169],"real":[171],"data":[172],"show":[173],"proposed":[176],"superior":[179],"to":[180],"two":[181],"popular":[182],"methods,":[183],"RNAfold":[184],"RNAstructure,":[186],"terms":[188],"sensitivity,":[190],"specificity":[191],"Matthews":[193],"correlation":[194],"coefficient":[195],"(MCC).":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
