{"id":"https://openalex.org/W2170527607","doi":"https://doi.org/10.1142/s0219720015500171","title":"A new approach to human microRNA target prediction using ensemble pruning and rotation forest","display_name":"A new approach to human microRNA target prediction using ensemble pruning and rotation forest","publication_year":2015,"publication_date":"2015-05-28","ids":{"openalex":"https://openalex.org/W2170527607","doi":"https://doi.org/10.1142/s0219720015500171","mag":"2170527607","pmid":"https://pubmed.ncbi.nlm.nih.gov/26017463"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720015500171","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720015500171","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088693792","display_name":"Reza Mousavi","orcid":"https://orcid.org/0000-0002-1990-7767"},"institutions":[{"id":"https://openalex.org/I183263030","display_name":"Graduate University of Advanced Technology","ror":"https://ror.org/0451xdy64","country_code":"IR","type":"education","lineage":["https://openalex.org/I183263030"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Reza Mousavi","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Graduate University of Advanced Technology, Kerman, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Graduate University of Advanced Technology, Kerman, Iran","institution_ids":["https://openalex.org/I183263030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048077935","display_name":"Mahdi Eftekhari","orcid":"https://orcid.org/0000-0002-0381-8225"},"institutions":[{"id":"https://openalex.org/I115566878","display_name":"Shahid Bahonar University of Kerman","ror":"https://ror.org/04zn42r77","country_code":"IR","type":"education","lineage":["https://openalex.org/I115566878"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mahdi Eftekhari","raw_affiliation_strings":["Department of Computer Engineering, Shahid Bahonar University of Kerman, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Shahid Bahonar University of Kerman, Iran","institution_ids":["https://openalex.org/I115566878"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079279655","display_name":"Mehdi Ghezelbash Haghighi","orcid":null},"institutions":[{"id":"https://openalex.org/I183263030","display_name":"Graduate University of Advanced Technology","ror":"https://ror.org/0451xdy64","country_code":"IR","type":"education","lineage":["https://openalex.org/I183263030"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mehdi Ghezelbash Haghighi","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Graduate University of Advanced Technology, Kerman, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Graduate University of Advanced Technology, Kerman, Iran","institution_ids":["https://openalex.org/I183263030"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5088693792"],"corresponding_institution_ids":["https://openalex.org/I183263030"],"apc_list":null,"apc_paid":null,"fwci":0.7952,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.70424477,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"13","issue":"06","first_page":"1550017","last_page":"1550017"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/majority-rule","display_name":"Majority rule","score":0.7749152779579163},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.644752562046051},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5870509743690491},{"id":"https://openalex.org/keywords/pruning","display_name":"Pruning","score":0.5593257546424866},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5457018613815308},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.542220413684845},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.5181090235710144},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5108358860015869},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5030826926231384},{"id":"https://openalex.org/keywords/random-subspace-method","display_name":"Random subspace method","score":0.4516654312610626},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40079906582832336},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3638398051261902},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.2375366985797882},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23236218094825745},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.13380062580108643},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09073007106781006}],"concepts":[{"id":"https://openalex.org/C153668964","wikidata":"https://www.wikidata.org/wiki/Q27636","display_name":"Majority rule","level":2,"score":0.7749152779579163},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.644752562046051},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5870509743690491},{"id":"https://openalex.org/C108010975","wikidata":"https://www.wikidata.org/wiki/Q500094","display_name":"Pruning","level":2,"score":0.5593257546424866},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5457018613815308},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.542220413684845},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.5181090235710144},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5108358860015869},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5030826926231384},{"id":"https://openalex.org/C106135958","wikidata":"https://www.wikidata.org/wiki/Q7291993","display_name":"Random subspace method","level":3,"score":0.4516654312610626},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40079906582832336},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3638398051261902},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.2375366985797882},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23236218094825745},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.13380062580108643},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09073007106781006},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720015500171","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720015500171","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:26017463","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26017463","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1565746575","https://openalex.org/W1592785605","https://openalex.org/W1966528152","https://openalex.org/W1975437957","https://openalex.org/W1989493946","https://openalex.org/W1993799748","https://openalex.org/W1994830145","https://openalex.org/W2002863353","https://openalex.org/W2006797972","https://openalex.org/W2009086942","https://openalex.org/W2017199818","https://openalex.org/W2040191060","https://openalex.org/W2050869737","https://openalex.org/W2053611784","https://openalex.org/W2053835153","https://openalex.org/W2057112538","https://openalex.org/W2061901534","https://openalex.org/W2073458778","https://openalex.org/W2082681476","https://openalex.org/W2089142809","https://openalex.org/W2093664890","https://openalex.org/W2098754973","https://openalex.org/W2100128988","https://openalex.org/W2103346566","https://openalex.org/W2103760949","https://openalex.org/W2112192177","https://openalex.org/W2115629999","https://openalex.org/W2116591959","https://openalex.org/W2117391818","https://openalex.org/W2128073546","https://openalex.org/W2132023025","https://openalex.org/W2133226725","https://openalex.org/W2134118500","https://openalex.org/W2134497014","https://openalex.org/W2149785901","https://openalex.org/W2150757437","https://openalex.org/W2156629568","https://openalex.org/W2163199119","https://openalex.org/W2487087946","https://openalex.org/W2498672755","https://openalex.org/W4302161581"],"related_works":["https://openalex.org/W1981866886","https://openalex.org/W2052615004","https://openalex.org/W2794896638","https://openalex.org/W1845209238","https://openalex.org/W3080944905","https://openalex.org/W2905430408","https://openalex.org/W2375074607","https://openalex.org/W2915435096","https://openalex.org/W206413454","https://openalex.org/W2979309038"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"are":[2,94,103,173],"small":[3],"non-coding":[4],"RNAs":[5],"that":[6,133,164],"have":[7],"important":[8],"functions":[9],"in":[10,154],"gene":[11],"regulation.":[12],"Since":[13],"finding":[14],"miRNA":[15,37,64,159,197],"target":[16,38,198],"experimentally":[17],"is":[18,31,46,85,122],"costly":[19],"and":[20,57,101,145,176],"needs":[21],"spending":[22],"much":[23],"time,":[24],"the":[25,68,82,91,98,118,129,134,147,155,165,180,194],"use":[26],"of":[27,79,116,120,128,141,157,196],"machine":[28],"learning":[29],"methods":[30,150],"a":[32,43,77,113],"growing":[33],"research":[34],"area":[35],"for":[36,192],"prediction.":[39,199],"In":[40,74,109],"this":[41],"paper,":[42],"new":[44],"approach":[45,69,168],"proposed":[47,166],"by":[48,88,125],"using":[49,105],"two":[50],"popular":[51],"ensemble":[52,84,167,182],"strategies,":[53],"i.e.":[54],"Ensemble":[55],"Pruning":[56],"Rotation":[58],"Forest":[59],"(EP-RTF),":[60],"to":[61,111],"predict":[62],"human":[63,158],"target.":[65,160],"For":[66],"EP,":[67],"utilizes":[70],"Genetic":[71],"Algorithm":[72],"(GA).":[73],"other":[75,181],"words,":[76],"subset":[78,115],"classifiers":[80,93,171],"from":[81],"heterogeneous":[83],"first":[86],"selected":[87,92],"GA.":[89,126],"Next,":[90],"trained":[95],"based":[96],"on":[97],"RTF":[99,121],"method":[100],"then":[102],"combined":[104],"weighted":[106],"majority":[107],"voting.":[108],"addition":[110],"seeking":[112],"better":[114],"classifiers,":[117],"parameter":[119],"also":[123],"optimized":[124],"Findings":[127],"present":[130],"study":[131],"confirm":[132],"newly":[135],"developed":[136],"EP-RTF":[137,191],"outperforms":[138],"(in":[139],"terms":[140],"classification":[142],"accuracy,":[143],"sensitivity,":[144],"specificity)":[146],"previously":[148],"applied":[149],"over":[151],"four":[152],"datasets":[153],"field":[156],"Diversity-error":[161],"diagrams":[162],"reveal":[163],"constructs":[169],"individual":[170],"which":[172],"more":[174],"accurate":[175],"usually":[177],"diverse":[178],"than":[179],"approaches.":[183],"Given":[184],"these":[185],"experimental":[186],"results,":[187],"we":[188],"highly":[189],"recommend":[190],"improving":[193],"performance":[195]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
