{"id":"https://openalex.org/W2101900974","doi":"https://doi.org/10.1142/s0219720015410061","title":"Investigating noise tolerance in an efficient engine for inferring biological regulatory networks","display_name":"Investigating noise tolerance in an efficient engine for inferring biological regulatory networks","publication_year":2015,"publication_date":"2015-02-09","ids":{"openalex":"https://openalex.org/W2101900974","doi":"https://doi.org/10.1142/s0219720015410061","mag":"2101900974","pmid":"https://pubmed.ncbi.nlm.nih.gov/25790786"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720015410061","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720015410061","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067735880","display_name":"Asako Komori","orcid":null},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Asako Komori","raw_affiliation_strings":["Department of Bioinformatics, Graduate School of Systems Life Sciences, Kyushu University, Fukuoka 8128582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Graduate School of Systems Life Sciences, Kyushu University, Fukuoka 8128582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113514783","display_name":"Yukihiro Maki","orcid":null},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yukihiro Maki","raw_affiliation_strings":["Advanced Research Center for Synthetic Systems Biology, Kyushu University, Fukuoka 8128582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Research Center for Synthetic Systems Biology, Kyushu University, Fukuoka 8128582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085725359","display_name":"Isao Ono","orcid":"https://orcid.org/0009-0008-2110-9853"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Isao Ono","raw_affiliation_strings":["Graduate School of Computational Intelligence and Systems Science, Tokyo Institute of Technology, Tokyo 2268502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Computational Intelligence and Systems Science, Tokyo Institute of Technology, Tokyo 2268502, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089630712","display_name":"Masahiro Okamoto","orcid":"https://orcid.org/0000-0002-8315-347X"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahiro Okamoto","raw_affiliation_strings":["Advanced Research Center for Synthetic Systems Biology, Kyushu University, Fukuoka 8128582, Japan","Department of Bioinformatics, Graduate School of Systems Life Sciences, Kyushu University, Fukuoka 8128582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Research Center for Synthetic Systems Biology, Kyushu University, Fukuoka 8128582, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Department of Bioinformatics, Graduate School of Systems Life Sciences, Kyushu University, Fukuoka 8128582, Japan","institution_ids":["https://openalex.org/I135598925"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1378,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.53695661,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"13","issue":"03","first_page":"1541006","last_page":"1541006"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.7430192828178406},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6128573417663574},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5781849026679993},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5128839015960693},{"id":"https://openalex.org/keywords/experimental-data","display_name":"Experimental data","score":0.4776569604873657},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.47210636734962463},{"id":"https://openalex.org/keywords/noisy-data","display_name":"Noisy data","score":0.468995600938797},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.44468748569488525},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3764182925224304},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3759116232395172},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3245079517364502},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3241785764694214},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.312132865190506},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2779541015625},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2294190526008606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19213342666625977},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19042596220970154},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13683271408081055},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08731818199157715}],"concepts":[{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.7430192828178406},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6128573417663574},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5781849026679993},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5128839015960693},{"id":"https://openalex.org/C55037315","wikidata":"https://www.wikidata.org/wiki/Q5421151","display_name":"Experimental data","level":2,"score":0.4776569604873657},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.47210636734962463},{"id":"https://openalex.org/C2781170535","wikidata":"https://www.wikidata.org/wiki/Q30587856","display_name":"Noisy data","level":2,"score":0.468995600938797},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.44468748569488525},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3764182925224304},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3759116232395172},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3245079517364502},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3241785764694214},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.312132865190506},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2779541015625},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2294190526008606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19213342666625977},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19042596220970154},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13683271408081055},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08731818199157715},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720015410061","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720015410061","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:25790786","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25790786","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:t2r2.star.titech.ac.jp:50336096","is_oa":false,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100720365","pdf_url":null,"source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323879","display_name":"University of Miyazaki","ror":"https://ror.org/0447kww10"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1565902586","https://openalex.org/W1621540022","https://openalex.org/W1984898776","https://openalex.org/W1987767328","https://openalex.org/W2046451925","https://openalex.org/W2070473094","https://openalex.org/W2089458178","https://openalex.org/W2511211295"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2158714033","https://openalex.org/W4385510321","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W2949927938","https://openalex.org/W4287026692","https://openalex.org/W78967844","https://openalex.org/W2131550814"],"abstract_inverted_index":{"Biological":[0],"systems":[1],"are":[2],"composed":[3],"of":[4,30,60,82,100,105],"biomolecules":[5],"such":[6],"as":[7],"genes,":[8],"proteins,":[9],"metabolites,":[10],"and":[11,96],"signaling":[12],"components,":[13],"which":[14],"interact":[15],"in":[16,71],"complex":[17,21],"networks.":[18],"To":[19],"understand":[20],"biological":[22],"systems,":[23],"it":[24],"is":[25,69],"important":[26],"to":[27,56],"be":[28],"capable":[29],"inferring":[31,49,85],"regulatory":[32],"networks":[33],"from":[34],"experimental":[35,72],"time":[36],"series":[37],"data.":[38,73],"In":[39,74],"previous":[40],"studies,":[41],"we":[42,53,77],"developed":[43],"efficient":[44],"numerical":[45],"optimization":[46,107],"methods":[47,62],"for":[48],"these":[50],"networks,":[51],"but":[52],"have":[54],"yet":[55],"test":[57],"the":[58,65,79,89,93,98],"performance":[59,99],"our":[61,83,101],"when":[63],"considering":[64],"error":[66],"(noise)":[67],"that":[68,104],"inherent":[70],"this":[75],"study,":[76],"investigated":[78],"noise":[80,90],"tolerance":[81],"proposed":[84],"engine.":[86],"We":[87],"prepared":[88],"data":[91],"using":[92],"Langevin":[94],"equation,":[95],"compared":[97],"method":[102],"with":[103],"alternative":[106],"methods.":[108]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
