{"id":"https://openalex.org/W2164504825","doi":"https://doi.org/10.1142/s0219720015400053","title":"A computational model of the effect of symplastic growth on cell mechanics in a linear leaf blade","display_name":"A computational model of the effect of symplastic growth on cell mechanics in a linear leaf blade","publication_year":2014,"publication_date":"2014-12-02","ids":{"openalex":"https://openalex.org/W2164504825","doi":"https://doi.org/10.1142/s0219720015400053","mag":"2164504825","pmid":"https://pubmed.ncbi.nlm.nih.gov/25556842"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720015400053","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720015400053","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036208901","display_name":"\u0423. \u0421. \u0417\u0443\u0431\u0430\u0438\u0440\u043e\u0432\u0430","orcid":"https://orcid.org/0000-0002-0730-9145"},"institutions":[{"id":"https://openalex.org/I4210116466","display_name":"Institute of Cytology and Genetics","ror":"https://ror.org/0277xgb12","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1313323035","https://openalex.org/I188973947","https://openalex.org/I4210116466","https://openalex.org/I4210127387","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Ulyana Zubairova","raw_affiliation_strings":["Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science, 10, Prospekt Lavrentyeva, Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science, 10, Prospekt Lavrentyeva, Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210116466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044517357","display_name":"Sergey Golushko","orcid":"https://orcid.org/0000-0002-0207-7648"},"institutions":[{"id":"https://openalex.org/I4210159365","display_name":"Technological Design Institute of Scientific Instrument Engineering","ror":"https://ror.org/053bhme26","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210159365"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Sergey Golushko","raw_affiliation_strings":["Design and Technology Institute of Digital Techniques of Siberian Branch of Russian Academy of Science, Laboratory of Analysis and Optimization of Technical Systems, 6, Akademika Rzhanova Str., Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"Design and Technology Institute of Digital Techniques of Siberian Branch of Russian Academy of Science, Laboratory of Analysis and Optimization of Technical Systems, 6, Akademika Rzhanova Str., Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210159365"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088202305","display_name":"Alexey Penenko","orcid":"https://orcid.org/0000-0002-1729-3343"},"institutions":[{"id":"https://openalex.org/I4210110796","display_name":"Institute of Computational Mathematics and Mathematical Geophysics","ror":"https://ror.org/01z686714","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110796","https://openalex.org/I4210124601"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Aleksey Penenko","raw_affiliation_strings":["Institute of Computational Mathematics and Mathematical Geophysics of Siberian Branch of Russian Academy of Science, 6, Prospekt Lavrentyeva, Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Mathematics and Mathematical Geophysics of Siberian Branch of Russian Academy of Science, 6, Prospekt Lavrentyeva, Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210110796"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089910523","display_name":"\u0421. \u0412. \u041d\u0438\u043a\u043e\u043b\u0430\u0435\u0432","orcid":"https://orcid.org/0000-0003-3232-1397"},"institutions":[{"id":"https://openalex.org/I4210116466","display_name":"Institute of Cytology and Genetics","ror":"https://ror.org/0277xgb12","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1313323035","https://openalex.org/I188973947","https://openalex.org/I4210116466","https://openalex.org/I4210127387","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Sergey Nikolaev","raw_affiliation_strings":["Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science, 10, Prospekt Lavrentyeva, Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science, 10, Prospekt Lavrentyeva, Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210116466"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036208901"],"corresponding_institution_ids":["https://openalex.org/I4210116466"],"apc_list":null,"apc_paid":null,"fwci":0.9162,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82176636,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"13","issue":"01","first_page":"1540005","last_page":"1540005"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12729","display_name":"Tree Root and Stability Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11927","display_name":"Plant Reproductive Biology","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plasmodesma","display_name":"Plasmodesma","score":0.659457802772522},{"id":"https://openalex.org/keywords/meristem","display_name":"Meristem","score":0.6244910359382629},{"id":"https://openalex.org/keywords/leaf-blade","display_name":"Leaf blade","score":0.5478744506835938},{"id":"https://openalex.org/keywords/cell-wall","display_name":"Cell wall","score":0.5386059284210205},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5248703360557556},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47321242094039917},{"id":"https://openalex.org/keywords/blade","display_name":"Blade (archaeology)","score":0.4479201138019562},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4475822150707245},{"id":"https://openalex.org/keywords/cell-growth","display_name":"Cell growth","score":0.43729591369628906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4331650137901306},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.41555696725845337},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.3744783401489258},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.3510385751724243},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14893877506256104},{"id":"https://openalex.org/keywords/shoot","display_name":"Shoot","score":0.13650187849998474},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12531831860542297},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0789099931716919}],"concepts":[{"id":"https://openalex.org/C169727747","wikidata":"https://www.wikidata.org/wiki/Q1134046","display_name":"Plasmodesma","level":3,"score":0.659457802772522},{"id":"https://openalex.org/C126021549","wikidata":"https://www.wikidata.org/wiki/Q207604","display_name":"Meristem","level":3,"score":0.6244910359382629},{"id":"https://openalex.org/C2991666437","wikidata":"https://www.wikidata.org/wiki/Q33971","display_name":"Leaf blade","level":2,"score":0.5478744506835938},{"id":"https://openalex.org/C125235067","wikidata":"https://www.wikidata.org/wiki/Q128700","display_name":"Cell wall","level":2,"score":0.5386059284210205},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5248703360557556},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47321242094039917},{"id":"https://openalex.org/C2776132848","wikidata":"https://www.wikidata.org/wiki/Q3045036","display_name":"Blade (archaeology)","level":2,"score":0.4479201138019562},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4475822150707245},{"id":"https://openalex.org/C62112901","wikidata":"https://www.wikidata.org/wiki/Q189159","display_name":"Cell growth","level":2,"score":0.43729591369628906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4331650137901306},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.41555696725845337},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.3744783401489258},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.3510385751724243},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14893877506256104},{"id":"https://openalex.org/C21410773","wikidata":"https://www.wikidata.org/wiki/Q220869","display_name":"Shoot","level":2,"score":0.13650187849998474},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12531831860542297},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0789099931716919},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009997","descriptor_name":"Osmotic Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009997","descriptor_name":"Osmotic Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009997","descriptor_name":"Osmotic Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D018519","descriptor_name":"Meristem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018519","descriptor_name":"Meristem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018519","descriptor_name":"Meristem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048429","descriptor_name":"Cell Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048429","descriptor_name":"Cell Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048429","descriptor_name":"Cell Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048708","descriptor_name":"Cell Growth Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048708","descriptor_name":"Cell Growth Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048708","descriptor_name":"Cell Growth Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720015400053","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720015400053","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:25556842","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25556842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6600000262260437}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1970072462","https://openalex.org/W1989184968","https://openalex.org/W2000618372","https://openalex.org/W2000690667","https://openalex.org/W2002223490","https://openalex.org/W2003721593","https://openalex.org/W2009772909","https://openalex.org/W2010769244","https://openalex.org/W2018440302","https://openalex.org/W2020851541","https://openalex.org/W2026265704","https://openalex.org/W2040370123","https://openalex.org/W2062738816","https://openalex.org/W2087456129","https://openalex.org/W2090850845","https://openalex.org/W2093833655","https://openalex.org/W2104494945","https://openalex.org/W2110014743","https://openalex.org/W2118923997","https://openalex.org/W2119549820","https://openalex.org/W2121010053","https://openalex.org/W2134208433","https://openalex.org/W2135393026","https://openalex.org/W2136075654","https://openalex.org/W2139907120","https://openalex.org/W2144866800","https://openalex.org/W2148293985","https://openalex.org/W2154289334","https://openalex.org/W2167417365","https://openalex.org/W4206047424","https://openalex.org/W4292888852"],"related_works":["https://openalex.org/W2361557614","https://openalex.org/W2072563749","https://openalex.org/W2106779559","https://openalex.org/W1970409205","https://openalex.org/W2323719091","https://openalex.org/W3135993681","https://openalex.org/W2061578030","https://openalex.org/W2381743531","https://openalex.org/W2905278730","https://openalex.org/W2383484441"],"abstract_inverted_index":{"The":[0,52,149,185],"epidermis":[1],"of":[2,14,48,83,95,109,143,147,170,178,187,190],"a":[3,40,80,129,154,158,164,200],"linear":[4,49,191],"leaf,":[5],"as":[6],"in":[7,157],"Poaceae,":[8],"is":[9,23,54,101,114,152,163,183],"established":[10],"by":[11,103,116],"parallel":[12,89],"files":[13],"cells":[15,85],"originating":[16],"from":[17,79,92],"the":[18,67,96,110,121,168,176,179,188],"leaf":[19,50,112,192],"base.":[20],"Their":[21],"feature":[22],"symplastic":[24,46,62,145],"growth":[25,47,63,105,108,146,169,194],"where":[26],"neighboring":[27],"cell":[28,60,76,90,94,100,155,174,180,202],"walls":[29],"adhere":[30],"and":[31,86,107,135,175],"do":[32],"not":[33],"slide":[34],"along":[35],"each":[36],"other.":[37],"We":[38,71],"developed":[39],"simple":[41],"mechanical":[42],"cell-based":[43],"model":[44,134],"for":[45,140,166,199],"blade.":[51],"challenge":[53],"to":[55,66,197],"determine":[56],"what":[57],"restrictions":[58],"on":[59],"size":[61],"creates":[64],"compared":[65,196],"free":[68],"growing":[69,75,173],"cells.":[70,122],"assume":[72],"an":[73,171],"unidirectional":[74],"ensemble":[77],"starting":[78],"meristem-like":[81],"layer":[82],"generative":[84],"then":[87],"generating":[88],"rows":[91],"every":[93],"initial":[97],"layer.":[98],"Each":[99],"characterized":[102],"its":[104,136],"function,":[106],"whole":[111],"blade":[113,193],"accompanied":[115],"mutual":[117],"adjustment":[118],"between":[119],"all":[120],"Cells":[123],"divide":[124],"once":[125],"they":[126],"have":[127],"reached":[128],"threshold":[130],"area.":[131],"A":[132],"mathematical":[133],"implementation":[137],"are":[138,195],"proposed":[139],"computational":[141],"simulation":[142,189],"1D":[144],"tissues.":[148],"question":[150],"analyzed":[151],"how":[153],"grows":[156],"plant":[159],"tissue":[160],"if":[161],"there":[162],"mechanism":[165],"regulating":[167],"isolated":[172],"behavior":[177],"wall":[181],"matter":[182],"elastoplastic.":[184],"results":[186],"those":[198],"free-growing":[201],"population.":[203]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
