{"id":"https://openalex.org/W2116787318","doi":"https://doi.org/10.1142/s0219720014500140","title":"Using data fusion for scoring reliability of protein\u2013protein interactions","display_name":"Using data fusion for scoring reliability of protein\u2013protein interactions","publication_year":2014,"publication_date":"2014-06-12","ids":{"openalex":"https://openalex.org/W2116787318","doi":"https://doi.org/10.1142/s0219720014500140","mag":"2116787318","pmid":"https://pubmed.ncbi.nlm.nih.gov/25152039"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720014500140","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720014500140","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021212429","display_name":"Alireza Vazifedoost","orcid":null},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Alireza Vazifedoost","raw_affiliation_strings":["School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005969937","display_name":"Maseud Rahgozar","orcid":"https://orcid.org/0000-0002-0836-2642"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Maseud Rahgozar","raw_affiliation_strings":["Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran","Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran#TAB#"],"affiliations":[{"raw_affiliation_string":"Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran#TAB#","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073252452","display_name":"Behzad Moshiri","orcid":"https://orcid.org/0000-0002-8390-4093"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Behzad Moshiri","raw_affiliation_strings":["Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran","Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran#TAB#"],"affiliations":[{"raw_affiliation_string":"Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran, Iran#TAB#","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012288522","display_name":"Mehdi Sadeghi","orcid":"https://orcid.org/0000-0001-6704-4591"},"institutions":[{"id":"https://openalex.org/I4210137727","display_name":"National Institute of Genetic Engineering and Biotechnology","ror":"https://ror.org/03ckh6215","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210137727"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mehdi Sadeghi","raw_affiliation_strings":["National Institute of Genetic Engineering and Biotechnology, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"National Institute of Genetic Engineering and Biotechnology, Tehran, Iran","institution_ids":["https://openalex.org/I4210137727"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056590153","display_name":"Hon Nian Chua","orcid":null},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hon Nian Chua","raw_affiliation_strings":["Institute for Infocomm Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110918847","display_name":"See Kiong Ng","orcid":null},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"See Kiong Ng","raw_affiliation_strings":["Institute for Infocomm Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]}],"countries":["FR","SG"],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["School of Computing, National University of Singapore, 13 Computing Drive, Singapore 117417, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, 13 Computing Drive, Singapore 117417, Singapore","institution_ids":["https://openalex.org/I165932596","https://openalex.org/I4210118524"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021212429"],"corresponding_institution_ids":["https://openalex.org/I23946033"],"apc_list":null,"apc_paid":null,"fwci":0.2789,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.59741903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"12","issue":"04","first_page":"1450014","last_page":"1450014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.960099995136261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.7756410837173462},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6903572678565979},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5763331055641174},{"id":"https://openalex.org/keywords/sensor-fusion","display_name":"Sensor fusion","score":0.48451751470565796},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.47995880246162415},{"id":"https://openalex.org/keywords/information-fusion","display_name":"Information fusion","score":0.45972177386283875},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.44059619307518005},{"id":"https://openalex.org/keywords/information-integration","display_name":"Information integration","score":0.41889703273773193},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35943442583084106},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3422449231147766}],"concepts":[{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.7756410837173462},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6903572678565979},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5763331055641174},{"id":"https://openalex.org/C33954974","wikidata":"https://www.wikidata.org/wiki/Q486494","display_name":"Sensor fusion","level":2,"score":0.48451751470565796},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.47995880246162415},{"id":"https://openalex.org/C2982962833","wikidata":"https://www.wikidata.org/wiki/Q17092450","display_name":"Information fusion","level":2,"score":0.45972177386283875},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.44059619307518005},{"id":"https://openalex.org/C33326189","wikidata":"https://www.wikidata.org/wiki/Q17092450","display_name":"Information integration","level":2,"score":0.41889703273773193},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35943442583084106},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3422449231147766},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003658","descriptor_name":"Decision Making, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003658","descriptor_name":"Decision Making, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003658","descriptor_name":"Decision Making, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720014500140","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720014500140","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:25152039","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25152039","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.6299999952316284,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W192378032","https://openalex.org/W434904553","https://openalex.org/W1548865516","https://openalex.org/W1659833910","https://openalex.org/W1883660207","https://openalex.org/W1918391659","https://openalex.org/W1956694423","https://openalex.org/W2002616065","https://openalex.org/W2022196194","https://openalex.org/W2030928641","https://openalex.org/W2033810643","https://openalex.org/W2036234778","https://openalex.org/W2037442572","https://openalex.org/W2037679672","https://openalex.org/W2048058569","https://openalex.org/W2060907774","https://openalex.org/W2080182143","https://openalex.org/W2084168100","https://openalex.org/W2085533272","https://openalex.org/W2099913238","https://openalex.org/W2100827857","https://openalex.org/W2102281458","https://openalex.org/W2103017472","https://openalex.org/W2112464428","https://openalex.org/W2113654464","https://openalex.org/W2121507105","https://openalex.org/W2134873429","https://openalex.org/W2140280811","https://openalex.org/W2144014661","https://openalex.org/W2145284532","https://openalex.org/W2149310258","https://openalex.org/W2155320925","https://openalex.org/W2156537287","https://openalex.org/W2163485494","https://openalex.org/W2163736554","https://openalex.org/W2165253681","https://openalex.org/W2166438558","https://openalex.org/W2346443999","https://openalex.org/W2521245737","https://openalex.org/W2582765108","https://openalex.org/W2797148637","https://openalex.org/W3043771091","https://openalex.org/W4205194992","https://openalex.org/W4301347335"],"related_works":["https://openalex.org/W3088112989","https://openalex.org/W2064717691","https://openalex.org/W2355440778","https://openalex.org/W2025225600","https://openalex.org/W2381518157","https://openalex.org/W2062592733","https://openalex.org/W2164160537","https://openalex.org/W2081383551","https://openalex.org/W2085627709","https://openalex.org/W2392793229"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1,107,177],"(PPIs)":[2],"are":[3],"important":[4],"for":[5,45],"understanding":[6],"the":[7,14,52,58,61,67,82,109,116,131,140,169,175,179],"cellular":[8],"mechanisms":[9],"of":[10,16,39,60,84,118,133],"biological":[11],"functions,":[12],"but":[13],"reliability":[15,43,132,141],"PPIs":[17,86,154],"extracted":[18],"by":[19,144],"high-throughput":[20],"assays":[21],"is":[22],"known":[23],"to":[24,41,80,104,128,207],"be":[25,99,125,191,205],"low.":[26],"To":[27],"address":[28],"this,":[29],"many":[30],"current":[31],"methods":[32],"use":[33],"multiple":[34,88,110,156],"evidence":[35,53,62],"from":[36,74,120,155,212],"different":[37],"sources":[38,69,90,181],"information":[40,68,76,89,111,122,157,180,213],"compute":[42],"scores":[44,142],"such":[46,167,202],"PPIs.":[47,134],"However,":[48],"they":[49],"often":[50],"combine":[51],"without":[54],"taking":[55],"into":[56],"account":[57],"uncertainty":[59],"values,":[63],"potential":[64,106],"dependencies":[65],"between":[66,108,178],"used":[70,206],"and":[71],"missing":[72,210],"values":[73,211],"some":[75],"sources.":[77,112,214],"We":[78,198],"propose":[79],"formulate":[81],"task":[83],"scoring":[85,163],"using":[87,101],"as":[91,168,183,185],"a":[92],"multi-criteria":[93],"decision":[94],"making":[95],"problem":[96],"that":[97,139,201],"can":[98,124,149,189,204],"solved":[100],"data":[102,114,146,195],"fusion":[103,147,196],"model":[105],"Using":[113],"fusion,":[115],"amount":[117],"contribution":[119],"each":[121],"source":[123],"proportioned":[126],"accordingly":[127],"systematically":[129],"score":[130],"Our":[135],"experimental":[136],"results":[137],"showed":[138,200],"assigned":[143],"our":[145,194],"method":[148],"effectively":[150,208],"classify":[151],"highly":[152],"reliable":[153],"sources,":[158],"with":[159,193],"substantial":[160],"improvement":[161],"in":[162],"over":[164],"conventional":[165],"approach":[166],"Adjust":[170],"CD-Distance":[171],"approach.":[172,197],"In":[173],"addition,":[174],"underlying":[176],"used,":[182],"well":[184],"their":[186],"relative":[187],"importance,":[188],"also":[190,199],"determined":[192],"knowledge":[203],"handle":[209]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
