{"id":"https://openalex.org/W2166995724","doi":"https://doi.org/10.1142/s0219720013430099","title":"<i>AB INITIO</i> HUMAN miRNA AND PRE-miRNA PREDICTION","display_name":"<i>AB INITIO</i> HUMAN miRNA AND PRE-miRNA PREDICTION","publication_year":2013,"publication_date":"2013-10-21","ids":{"openalex":"https://openalex.org/W2166995724","doi":"https://doi.org/10.1142/s0219720013430099","mag":"2166995724","pmid":"https://pubmed.ncbi.nlm.nih.gov/24372038"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720013430099","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720013430099","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016582163","display_name":"\u0418. \u0418. \u0422\u0438\u0442\u043e\u0432","orcid":"https://orcid.org/0000-0002-2691-3292"},"institutions":[{"id":"https://openalex.org/I188973947","display_name":"Novosibirsk State University","ror":"https://ror.org/04t2ss102","country_code":"RU","type":"education","lineage":["https://openalex.org/I188973947"]},{"id":"https://openalex.org/I4210116466","display_name":"Institute of Cytology and Genetics","ror":"https://ror.org/0277xgb12","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1313323035","https://openalex.org/I188973947","https://openalex.org/I4210116466","https://openalex.org/I4210127387","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"IGOR I. TITOV","raw_affiliation_strings":["Institute of Cytology and Genetics, SB RAS, 10 Lavrentyev Avenue, Novosibirsk 630090, Russian Federation","Novosibirsk State University, 2 Pirogov Street, Novosibirsk 630090, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Institute of Cytology and Genetics, SB RAS, 10 Lavrentyev Avenue, Novosibirsk 630090, Russian Federation","institution_ids":["https://openalex.org/I4210116466","https://openalex.org/I4210127387"]},{"raw_affiliation_string":"Novosibirsk State University, 2 Pirogov Street, Novosibirsk 630090, Russian Federation","institution_ids":["https://openalex.org/I188973947"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085668496","display_name":"P. S. Vorozheykin","orcid":null},"institutions":[{"id":"https://openalex.org/I188973947","display_name":"Novosibirsk State University","ror":"https://ror.org/04t2ss102","country_code":"RU","type":"education","lineage":["https://openalex.org/I188973947"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"PAVEL S. VOROZHEYKIN","raw_affiliation_strings":["Novosibirsk State University, 2 Pirogov Street, Novosibirsk 630090, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Novosibirsk State University, 2 Pirogov Street, Novosibirsk 630090, Russian Federation","institution_ids":["https://openalex.org/I188973947"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016582163"],"corresponding_institution_ids":["https://openalex.org/I188973947","https://openalex.org/I4210116466","https://openalex.org/I4210127387"],"apc_list":null,"apc_paid":null,"fwci":0.2292,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.6335217,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"06","first_page":"1343009","last_page":"1343009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7602289915084839},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6865032911300659},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6710803508758545},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.6656198501586914},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5494338274002075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4996519088745117},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4742649793624878},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41185152530670166},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.41086316108703613},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3678848445415497},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3501027822494507},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3448061943054199},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.30955180525779724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26128822565078735},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.10436001420021057},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.07742142677307129},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.06533807516098022}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7602289915084839},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6865032911300659},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6710803508758545},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.6656198501586914},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5494338274002075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4996519088745117},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4742649793624878},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41185152530670166},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.41086316108703613},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3678848445415497},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3501027822494507},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3448061943054199},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.30955180525779724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26128822565078735},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.10436001420021057},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.07742142677307129},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.06533807516098022},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012322","descriptor_name":"RNA Precursors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012322","descriptor_name":"RNA Precursors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012322","descriptor_name":"RNA Precursors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720013430099","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720013430099","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:24372038","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24372038","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W99569283","https://openalex.org/W113288072","https://openalex.org/W144423133","https://openalex.org/W1491989688","https://openalex.org/W1845151788","https://openalex.org/W1920564293","https://openalex.org/W1973158080","https://openalex.org/W1977064582","https://openalex.org/W1978379303","https://openalex.org/W1993799748","https://openalex.org/W2016003303","https://openalex.org/W2017426710","https://openalex.org/W2032766715","https://openalex.org/W2051535323","https://openalex.org/W2052210687","https://openalex.org/W2056296030","https://openalex.org/W2056852629","https://openalex.org/W2066581211","https://openalex.org/W2071893696","https://openalex.org/W2076422568","https://openalex.org/W2078535993","https://openalex.org/W2080907397","https://openalex.org/W2097984977","https://openalex.org/W2098044747","https://openalex.org/W2099855036","https://openalex.org/W2106144124","https://openalex.org/W2106348976","https://openalex.org/W2106423003","https://openalex.org/W2112192177","https://openalex.org/W2114973325","https://openalex.org/W2125838338","https://openalex.org/W2128842478","https://openalex.org/W2137597742","https://openalex.org/W2138664009","https://openalex.org/W2140446903","https://openalex.org/W2140751493","https://openalex.org/W2150770935","https://openalex.org/W2153898988","https://openalex.org/W2156847802","https://openalex.org/W2162674813","https://openalex.org/W2162855805","https://openalex.org/W2167977613"],"related_works":["https://openalex.org/W2053269318","https://openalex.org/W2364370872","https://openalex.org/W2097963413","https://openalex.org/W2025614924","https://openalex.org/W2294335174","https://openalex.org/W3145575561","https://openalex.org/W2995886640","https://openalex.org/W1591475660","https://openalex.org/W2001275470","https://openalex.org/W1834463255"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"are":[2,40],"small":[3],"single-stranded":[4],"noncoding":[5],"RNAs":[6],"that":[7,88,103],"play":[8],"an":[9],"important":[10],"role":[11],"in":[12,124],"post-transcriptional":[13],"regulation":[14],"of":[15,30,58,63,82,127],"gene":[16],"expression.":[17],"In":[18],"this":[19],"paper,":[20],"we":[21,101],"present":[22],"a":[23,66,107],"web":[24,132],"server":[25,133],"for":[26,112],"ab":[27],"initio":[28],"prediction":[29,38,109,126],"the":[31,43,48,55,64,73,83,98,125,128],"human":[32,94,113],"miRNAs":[33],"and":[34,47,60,72,115],"their":[35],"precursors.":[36],"The":[37,80,117,131],"methods":[39,100],"based":[41],"on":[42],"hidden":[44],"Markov":[45,76],"Models":[46],"context-structural":[49,75],"characteristics.":[50],"By":[51],"taking":[52],"into":[53],"account":[54],"identified":[56],"patterns":[57],"primary":[59],"secondary":[61],"structures":[62],"pre-miRNAs,":[65],"new":[67],"HMM":[68],"model":[69,77],"is":[70,78,134],"proposed":[71],"existing":[74,99],"modified.":[79],"evaluation":[81],"method":[84,105],"performance":[85],"has":[86,106],"shown":[87],"it":[89],"can":[90],"accurately":[91],"predict":[92],"novel":[93],"miRNAs.":[95,116,130],"Comparing":[96],"with":[97],"demonstrate":[102],"our":[104],"higher":[108],"quality":[110],"both":[111],"pre-miRNAs":[114],"models":[118],"have":[119],"also":[120],"showed":[121],"good":[122],"results":[123],"mouse":[129],"available":[135],"at":[136],"http://wwwmgs.bionet.nsc.ru/mgs/programs/rnaanalys":[137],"(mirror":[138],"http://miRNA.at.nsu.ru":[139],").":[140]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
