{"id":"https://openalex.org/W2090894835","doi":"https://doi.org/10.1142/s0219720012500138","title":"CONSTRUCTING A MINIMUM PHYLOGENETIC NETWORK FROM A DENSE TRIPLET SET","display_name":"CONSTRUCTING A MINIMUM PHYLOGENETIC NETWORK FROM A DENSE TRIPLET SET","publication_year":2012,"publication_date":"2012-06-04","ids":{"openalex":"https://openalex.org/W2090894835","doi":"https://doi.org/10.1142/s0219720012500138","mag":"2090894835","pmid":"https://pubmed.ncbi.nlm.nih.gov/22849368"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720012500138","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720012500138","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022152674","display_name":"Michel Habib","orcid":"https://orcid.org/0000-0002-8564-2314"},"institutions":[{"id":"https://openalex.org/I4210094115","display_name":"Laboratoire d'Informatique Algorithmique: Fondements et Applications","ror":"https://ror.org/00pbqgm18","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094115","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"MICHEL HABIB","raw_affiliation_strings":["Universit\u00e9 Paris Diderot \u2014 Paris 7, LIAFA, Case 7014, 75205 Paris Cedex 13, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Diderot \u2014 Paris 7, LIAFA, Case 7014, 75205 Paris Cedex 13, France","institution_ids":["https://openalex.org/I4210094115","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039766356","display_name":"Thu\u2010Hien To","orcid":"https://orcid.org/0000-0003-2902-3655"},"institutions":[{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4412460525"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"THU-HIEN TO","raw_affiliation_strings":["LIRMM \u2014 CNRS, France","LIRMM, CNRS, France#TAB#"],"affiliations":[{"raw_affiliation_string":"LIRMM \u2014 CNRS, France","institution_ids":["https://openalex.org/I4210101743","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LIRMM, CNRS, France#TAB#","institution_ids":["https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022152674"],"corresponding_institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210094115"],"apc_list":null,"apc_paid":null,"fwci":0.5253,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.65261713,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"05","first_page":"1250013","last_page":"1250013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9617999792098999,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9502999782562256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.7281119227409363},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6406395435333252},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6316564083099365},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6135622262954712},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5902204513549805},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5533292293548584},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5224291682243347},{"id":"https://openalex.org/keywords/binary-logarithm","display_name":"Binary logarithm","score":0.4779075086116791},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.47332581877708435},{"id":"https://openalex.org/keywords/polynomial","display_name":"Polynomial","score":0.46362900733947754},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.3833989202976227},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3026406168937683},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13247784972190857}],"concepts":[{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.7281119227409363},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6406395435333252},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6316564083099365},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6135622262954712},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5902204513549805},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5533292293548584},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5224291682243347},{"id":"https://openalex.org/C63553672","wikidata":"https://www.wikidata.org/wiki/Q581168","display_name":"Binary logarithm","level":2,"score":0.4779075086116791},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.47332581877708435},{"id":"https://openalex.org/C90119067","wikidata":"https://www.wikidata.org/wiki/Q43260","display_name":"Polynomial","level":2,"score":0.46362900733947754},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.3833989202976227},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3026406168937683},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13247784972190857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720012500138","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720012500138","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:22849368","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22849368","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1527128109","https://openalex.org/W1533486682","https://openalex.org/W1535064766","https://openalex.org/W1602658561","https://openalex.org/W1602925841","https://openalex.org/W1778865519","https://openalex.org/W1821350330","https://openalex.org/W1986316739","https://openalex.org/W2033833391","https://openalex.org/W2066429145","https://openalex.org/W2078109763","https://openalex.org/W2090258182","https://openalex.org/W2129573652","https://openalex.org/W2161063454","https://openalex.org/W2344026690","https://openalex.org/W2951642684","https://openalex.org/W2988480584","https://openalex.org/W3136367277"],"related_works":["https://openalex.org/W4254268221","https://openalex.org/W2951650999","https://openalex.org/W2038264393","https://openalex.org/W147282674","https://openalex.org/W2112400707","https://openalex.org/W4300585845","https://openalex.org/W2132010001","https://openalex.org/W2101991559","https://openalex.org/W2152997891","https://openalex.org/W2951248153"],"abstract_inverted_index":{"For":[0,84,134],"a":[1,8,19,37,100,121,143],"given":[2],"set":[3,9],"L":[4],"of":[5,11,32,36,45,150],"species":[6],"and":[7,64,73,77,96,126,129,153],"T":[10,26,53],"triplets":[12,31],"on":[13],"L,":[14],"we":[15,110],"seek":[16],"to":[17,61,141],"construct":[18,62,142],"phylogenetic":[20],"network":[21,38,145],"which":[22,28],"is":[23,39,54,139,159],"consistent":[24,154],"with":[25,99,155],"i.e.":[27],"represents":[29],"all":[30],"T.":[33],"The":[34],"level":[35],"defined":[40],"as":[41],"the":[42,92,112,117,147],"maximum":[43],"number":[44,149],"hybrid":[46,151],"vertices":[47,152],"in":[48,91,124,161],"its":[49],"biconnected":[50],"components.":[51],"When":[52],"dense,":[55],"there":[56,158],"exist":[57],"polynomial":[58,101],"time":[59,102,162],"algorithms":[60],"level-0,1":[63],"2":[65],"networks":[66],"(Aho":[67],"et":[68,81,131],"al.,":[69,82],"1981;":[70],"Jansson,":[71],"Nguyen":[72],"Sung,":[74,78],"2006;":[75,79],"Jansson":[76,125],"Iersel":[80,95,130],"2009).":[83],"higher":[85],"levels,":[86],"partial":[87],"answers":[88],"were":[89],"obtained":[90],"paper":[93],"by":[94],"Kelk":[97],"(2008),":[98],"algorithm":[103],"for":[104,116],"simple":[105],"networks.":[106],"In":[107],"this":[108],"paper,":[109],"detail":[111],"first":[113],"complete":[114],"answer":[115],"general":[118],"case,":[119],"solving":[120],"problem":[122],"proposed":[123],"Sung":[127],"(2006)":[128],"al.":[132],"(2009).":[133],"any":[135],"k":[136],"fixed,":[137],"it":[138],"possible":[140],"level-k":[144],"having":[146],"minimum":[148],"T,":[156],"if":[157],"any,":[160],"O(T(k+1)n([4k/3]+1)).":[163]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}