{"id":"https://openalex.org/W2109286258","doi":"https://doi.org/10.1142/s0219720012410053","title":"ANALYSIS OF CONTEXT-DEPENDENT ERRORS FOR ILLUMINA SEQUENCING","display_name":"ANALYSIS OF CONTEXT-DEPENDENT ERRORS FOR ILLUMINA SEQUENCING","publication_year":2012,"publication_date":"2012-01-30","ids":{"openalex":"https://openalex.org/W2109286258","doi":"https://doi.org/10.1142/s0219720012410053","mag":"2109286258","pmid":"https://pubmed.ncbi.nlm.nih.gov/22809341"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720012410053","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720012410053","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032702053","display_name":"Irina Abnizova","orcid":"https://orcid.org/0000-0002-8460-8210"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"IRINA ABNIZOVA","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104077634","display_name":"Steven Leonard","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"STEVEN LEONARD","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054374928","display_name":"Tom Skelly","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"TOM SKELLY","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113718521","display_name":"Andy Brown","orcid":"https://orcid.org/0009-0009-8352-5606"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"ANDY BROWN","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036633643","display_name":"David K. Jackson","orcid":"https://orcid.org/0000-0002-8090-9462"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"DAVID JACKSON","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110845955","display_name":"Marina Gourtovaia","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"MARINA GOURTOVAIA","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022542014","display_name":"Guoying Qi","orcid":"https://orcid.org/0000-0003-1262-8973"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"GUOYING QI","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108374846","display_name":"Ren\u00e9 te Boekhorst","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"RENE TE BOEKHORST","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003383611","display_name":"Nadeem Faruque","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"NADEEM FARUQUE","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061775800","display_name":"Kevin Lewis","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"KEVIN LEWIS","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112785429","display_name":"Tony Cox","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"TONY COX","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA UK","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.3438,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.80028916,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"02","first_page":"1241005","last_page":"1241005"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5808090567588806},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5586801767349243},{"id":"https://openalex.org/keywords/conditional-probability","display_name":"Conditional probability","score":0.4749175012111664},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4709160029888153},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39766520261764526},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36193567514419556},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3516964912414551},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.294305682182312},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2325153350830078},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1350160837173462}],"concepts":[{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5808090567588806},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5586801767349243},{"id":"https://openalex.org/C44492722","wikidata":"https://www.wikidata.org/wiki/Q327069","display_name":"Conditional probability","level":2,"score":0.4749175012111664},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4709160029888153},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39766520261764526},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36193567514419556},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3516964912414551},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.294305682182312},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2325153350830078},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1350160837173462},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720012410053","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720012410053","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:22809341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22809341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:uhra.herts.ac.uk:2299/8704","is_oa":false,"landing_page_url":"http://hdl.handle.net/2299/8704","pdf_url":null,"source":{"id":"https://openalex.org/S4306400241","display_name":"University of Hertfordshire Research Archive (University of Hertfordshire)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141584323","host_organization_name":"University of Hertfordshire","host_organization_lineage":["https://openalex.org/I141584323"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1532331378","https://openalex.org/W1979341154","https://openalex.org/W1994880286","https://openalex.org/W2014303089","https://openalex.org/W2019851585","https://openalex.org/W2035677469","https://openalex.org/W2039716761","https://openalex.org/W2103441770","https://openalex.org/W2119923823","https://openalex.org/W2121016876","https://openalex.org/W2131088968","https://openalex.org/W2139378708","https://openalex.org/W2151732271","https://openalex.org/W4293088719"],"related_works":["https://openalex.org/W2065530813","https://openalex.org/W2041765120","https://openalex.org/W1509071637","https://openalex.org/W2957509185","https://openalex.org/W1536710881","https://openalex.org/W2137231843","https://openalex.org/W1996193785","https://openalex.org/W2100355520","https://openalex.org/W4247501973","https://openalex.org/W1888579111"],"abstract_inverted_index":{"The":[0],"new":[1],"generation":[2],"of":[3,10,26,32,56,74,86,93,108,169,175,190],"short-read":[4],"sequencing":[5,45,57,121],"technologies":[6],"requires":[7],"reliable":[8],"measures":[9,14,138],"data":[11],"quality.":[12],"Such":[13],"are":[15],"especially":[16],"important":[17,64],"for":[18],"variant":[19],"calling.":[20],"However,":[21],"in":[22],"the":[23,54,60,71,87,106,167],"particular":[24],"case":[25],"SNP":[27],"calling,":[28],"a":[29,126,149,162,183],"great":[30],"number":[31],"false-positive":[33],"SNPs":[34,43],"may":[35],"be":[36,96,118],"obtained.":[37],"One":[38],"needs":[39],"to":[40,65,104,111,117,120,124,131,139,165,193],"distinguish":[41,66,140],"putative":[42],"from":[44],"or":[46],"other":[47],"errors.":[48],"We":[49,134,181],"found":[50],"that":[51,85,115],"not":[52],"only":[53],"probability":[55,73,174],"errors":[58,143],"(i.e.":[59],"quality":[61,129],"value)":[62,189],"is":[63,110],"an":[67],"FP-SNP":[68],"but":[69],"also":[70],"conditional":[72,83,128,173],"\"correcting\"":[75],"this":[76,99],"error":[77],"(the":[78],"\"second":[79],"best":[80,178],"call\"":[81],"probability,":[82],"on":[84,148,172],"first":[88],"call).":[89],"Surprisingly,":[90],"around":[91],"80%":[92],"mismatches":[94],"can":[95],"\"corrected\"":[97],"with":[98],"second":[100,185],"call.":[101,180],"Another":[102],"way":[103],"reduce":[105],"rate":[107],"FP-SNPs":[109],"retrieve":[112],"DNA":[113],"motifs":[114],"seem":[116],"prone":[119],"errors,":[122],"and":[123,144,154],"attach":[125,182],"corresponding":[127,184],"value":[130],"these":[132],"motifs.":[133],"have":[135],"developed":[136],"several":[137],"between":[141],"sequence":[142],"candidate":[145],"SNPs,":[146],"based":[147,171],"base":[150],"call's":[151],"nucleotide":[152],"context":[153],"its":[155],"mismatch":[156],"type.":[157],"In":[158],"addition,":[159],"we":[160],"suggested":[161],"simple":[163],"method":[164],"correct":[166],"majority":[168],"mismatches,":[170],"their":[176],"\"second\"":[177],"intensity":[179],"call":[186],"confidence":[187],"(quality":[188],"being":[191],"corrected":[192],"each":[194],"mismatch.":[195]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
