{"id":"https://openalex.org/W2062685052","doi":"https://doi.org/10.1142/s0219720012300018","title":"PROGRESS IN COMPUTATIONAL STUDIES OF HOST\u2013PATHOGEN INTERACTIONS","display_name":"PROGRESS IN COMPUTATIONAL STUDIES OF HOST\u2013PATHOGEN INTERACTIONS","publication_year":2012,"publication_date":"2012-08-31","ids":{"openalex":"https://openalex.org/W2062685052","doi":"https://doi.org/10.1142/s0219720012300018","mag":"2062685052","pmid":"https://pubmed.ncbi.nlm.nih.gov/23600809"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720012300018","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720012300018","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065829677","display_name":"Hufeng Zhou","orcid":"https://orcid.org/0000-0001-9382-5674"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"HUFENG ZHOU","raw_affiliation_strings":["NUS Graduate School for Integrative Sciences &amp; Engineering, National University of Singapore, Singapore 117456, Singapore"],"affiliations":[{"raw_affiliation_string":"NUS Graduate School for Integrative Sciences &amp; Engineering, National University of Singapore, Singapore 117456, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101639377","display_name":"Jingjing Jin","orcid":"https://orcid.org/0000-0002-9793-3362"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"JINGJING JIN","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore 117417, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore 117417, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"LIMSOON WONG","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore 117417, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore 117417, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065829677"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":1.8387,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.84940909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"02","first_page":"1230001","last_page":"1230001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.7927324771881104},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.6492171287536621},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5368621349334717},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4877987205982208},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33739370107650757},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26485496759414673}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.7927324771881104},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.6492171287536621},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5368621349334717},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4877987205982208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33739370107650757},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26485496759414673}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054298","descriptor_name":"Human Immunodeficiency Virus Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054298","descriptor_name":"Human Immunodeficiency Virus Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054298","descriptor_name":"Human Immunodeficiency Virus Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054298","descriptor_name":"Human Immunodeficiency Virus Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054298","descriptor_name":"Human Immunodeficiency Virus Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054298","descriptor_name":"Human Immunodeficiency Virus Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720012300018","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720012300018","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:23600809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23600809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/42339","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/42339","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Review"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":91,"referenced_works":["https://openalex.org/W1508416409","https://openalex.org/W1559606743","https://openalex.org/W1963515263","https://openalex.org/W1963849889","https://openalex.org/W1964016865","https://openalex.org/W1965202162","https://openalex.org/W1966546784","https://openalex.org/W1967572918","https://openalex.org/W1968181000","https://openalex.org/W1969098574","https://openalex.org/W1969941684","https://openalex.org/W1979601325","https://openalex.org/W1981990581","https://openalex.org/W1982428412","https://openalex.org/W2009884897","https://openalex.org/W2015410041","https://openalex.org/W2017418049","https://openalex.org/W2031407766","https://openalex.org/W2032243072","https://openalex.org/W2047990563","https://openalex.org/W2055956456","https://openalex.org/W2059325738","https://openalex.org/W2064086754","https://openalex.org/W2064688622","https://openalex.org/W2068880841","https://openalex.org/W2072491714","https://openalex.org/W2077398039","https://openalex.org/W2077997913","https://openalex.org/W2080922074","https://openalex.org/W2081722478","https://openalex.org/W2085277871","https://openalex.org/W2088422296","https://openalex.org/W2091448229","https://openalex.org/W2092575282","https://openalex.org/W2094757405","https://openalex.org/W2096092072","https://openalex.org/W2096766502","https://openalex.org/W2099131261","https://openalex.org/W2099182237","https://openalex.org/W2101330776","https://openalex.org/W2101730352","https://openalex.org/W2102992354","https://openalex.org/W2105476170","https://openalex.org/W2110371871","https://openalex.org/W2115048111","https://openalex.org/W2116211027","https://openalex.org/W2117513900","https://openalex.org/W2118128448","https://openalex.org/W2118754867","https://openalex.org/W2122683221","https://openalex.org/W2124463526","https://openalex.org/W2127864764","https://openalex.org/W2128620821","https://openalex.org/W2130675570","https://openalex.org/W2130687290","https://openalex.org/W2131858707","https://openalex.org/W2133177319","https://openalex.org/W2133654213","https://openalex.org/W2137955461","https://openalex.org/W2139119391","https://openalex.org/W2140354550","https://openalex.org/W2140364813","https://openalex.org/W2144014661","https://openalex.org/W2144771278","https://openalex.org/W2144810256","https://openalex.org/W2145514756","https://openalex.org/W2145848202","https://openalex.org/W2147582157","https://openalex.org/W2147714160","https://openalex.org/W2150934340","https://openalex.org/W2155142785","https://openalex.org/W2155723007","https://openalex.org/W2156269526","https://openalex.org/W2158197251","https://openalex.org/W2158700061","https://openalex.org/W2159126118","https://openalex.org/W2162945495","https://openalex.org/W2165253681","https://openalex.org/W2165703995","https://openalex.org/W2166043581","https://openalex.org/W2166438558","https://openalex.org/W2166574880","https://openalex.org/W2166836960","https://openalex.org/W2168514491","https://openalex.org/W2168549338","https://openalex.org/W2168833259","https://openalex.org/W2329194622","https://openalex.org/W2915108429","https://openalex.org/W2916288174","https://openalex.org/W3157329664","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2091398531","https://openalex.org/W2343234619","https://openalex.org/W3173815060","https://openalex.org/W4286497165"],"abstract_inverted_index":{"Host-pathogen":[0],"interactions":[1,22],"are":[2],"important":[3],"for":[4,69],"understanding":[5],"infection":[6],"mechanism":[7],"and":[8,12,31,36,42,52,64,66,75],"developing":[9],"better":[10],"treatment":[11],"prevention":[13],"of":[14,44,54],"infectious":[15],"diseases.":[16],"Many":[17],"computational":[18,45],"studies":[19,46],"on":[20,47],"host-pathogen":[21,48,55,62,70],"have":[23],"been":[24],"published.":[25],"Here,":[26],"we":[27],"review":[28],"recent":[29],"progress":[30],"results":[32],"in":[33],"this":[34],"field":[35],"provide":[37],"a":[38],"systematic":[39],"summary,":[40],"comparison":[41],"discussion":[43],"interactions,":[49],"including":[50],"prediction":[51],"analysis":[53],"protein-protein":[56],"interactions;":[57,63],"basic":[58],"principles":[59],"revealed":[60],"from":[61],"database":[65],"software":[67],"tools":[68],"interaction":[71],"data":[72],"collection,":[73],"integration":[74],"analysis.":[76]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
