{"id":"https://openalex.org/W1989013231","doi":"https://doi.org/10.1142/s0219720011005665","title":"COMPARISON OF TWO ACADEMIC SOFTWARE PACKAGES FOR ANALYZING TWO-DIMENSIONAL GEL IMAGES","display_name":"COMPARISON OF TWO ACADEMIC SOFTWARE PACKAGES FOR ANALYZING TWO-DIMENSIONAL GEL IMAGES","publication_year":2011,"publication_date":"2011-08-01","ids":{"openalex":"https://openalex.org/W1989013231","doi":"https://doi.org/10.1142/s0219720011005665","mag":"1989013231","pmid":"https://pubmed.ncbi.nlm.nih.gov/22084013"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720011005665","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720011005665","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061664218","display_name":"Yukun Wu","orcid":"https://orcid.org/0000-0002-2747-5685"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"YUKUN WU","raw_affiliation_strings":["Center for Vaccine Development, University of Maryland School of Medicine, Baltimore, MD 21201, USA","Center for Vaccine Development, University of Maryland School of Medicine, Baltimore, MD 21201, USA.,"],"affiliations":[{"raw_affiliation_string":"Center for Vaccine Development, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]},{"raw_affiliation_string":"Center for Vaccine Development, University of Maryland School of Medicine, Baltimore, MD 21201, USA.,","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100350625","display_name":"Le Zhang","orcid":"https://orcid.org/0000-0002-3708-1727"},"institutions":[{"id":"https://openalex.org/I11957088","display_name":"Michigan Technological University","ror":"https://ror.org/0036rpn28","country_code":"US","type":"education","lineage":["https://openalex.org/I11957088"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"LE ZHANG","raw_affiliation_strings":["Department of Mathematical Sciences, Michigan Technological University, Houghton, MI 49931, USA","Department of Mathematical Sciences, Michigan Technological University, Houghton, MI $49931$, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, Michigan Technological University, Houghton, MI 49931, USA","institution_ids":["https://openalex.org/I11957088"]},{"raw_affiliation_string":"Department of Mathematical Sciences, Michigan Technological University, Houghton, MI $49931$, USA","institution_ids":["https://openalex.org/I11957088"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061664218"],"corresponding_institution_ids":["https://openalex.org/I126744593"],"apc_list":null,"apc_paid":null,"fwci":0.483,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.62342838,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"09","issue":"06","first_page":"775","last_page":"794"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9571999907493591,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7324531674385071},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7312921285629272},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5164797306060791},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.459256112575531},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4301707148551941},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.42816826701164246},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3734901547431946},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08826398849487305},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.0832759439945221}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7324531674385071},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7312921285629272},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5164797306060791},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.459256112575531},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4301707148551941},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.42816826701164246},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3734901547431946},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08826398849487305},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0832759439945221},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720011005665","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720011005665","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:22084013","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22084013","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:digitalcommons.mtu.edu:michigantech-p-31751","is_oa":false,"landing_page_url":"https://digitalcommons.mtu.edu/michigantech-p/12449","pdf_url":null,"source":{"id":"https://openalex.org/S4377196391","display_name":"Digital Commons - Michigan Tech (Michigan Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11957088","host_organization_name":"Michigan Technological University","host_organization_lineage":["https://openalex.org/I11957088"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Michigan Tech Publications, Part 1","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W11255425","https://openalex.org/W1606423922","https://openalex.org/W1984035701","https://openalex.org/W1995886222","https://openalex.org/W2005174877","https://openalex.org/W2017646143","https://openalex.org/W2048333869","https://openalex.org/W2089212329","https://openalex.org/W2101575467","https://openalex.org/W2110065044","https://openalex.org/W2121387541","https://openalex.org/W2124260943","https://openalex.org/W2133059825","https://openalex.org/W4238893999"],"related_works":["https://openalex.org/W3107474891","https://openalex.org/W2033914206","https://openalex.org/W2146076056","https://openalex.org/W2163831990","https://openalex.org/W3003836766","https://openalex.org/W2378160586","https://openalex.org/W1978450727","https://openalex.org/W4244943737","https://openalex.org/W2996038082","https://openalex.org/W2102298087"],"abstract_inverted_index":{"One":[0],"of":[1,15,125,140],"the":[2,13,57,123],"key":[3],"limitations":[4],"for":[5,22,35,46,72,103,172],"proteomic":[6],"studies":[7],"using":[8],"two-dimensional":[9],"(2D)":[10],"gel":[11,37,106],"is":[12,43,52,69,79,135,153,159],"lack":[14],"automatic,":[16,82],"fast,":[17,80],"robust,":[18],"and":[19,25,49,54,64,83,90,95,101,116,128,143,152,165],"reliable":[20],"methods":[21],"detecting,":[23],"matching,":[24,50],"quantifying":[26],"protein":[27],"spots.":[28],"Although":[29],"there":[30],"are":[31,61],"commercial":[32,58],"software":[33,59,77,98,110,170],"packages":[34,60,111,171],"2D":[36,105],"image":[38],"analysis,":[39],"extensive":[40],"human":[41],"intervention":[42],"still":[44],"needed":[45],"spot":[47,126,141],"detection":[48,127,142],"which":[51],"time-consuming":[53],"error-prone.":[55],"Moreover,":[56],"usually":[62],"expensive":[63],"non-open":[65],"source.":[66],"Thus,":[67],"it":[68],"very":[70],"beneficial":[71],"researchers":[73],"to":[74,162],"have":[75,118],"free":[76],"that":[78],"fully":[81],"robust.":[84],"In":[85,156],"this":[86],"paper,":[87],"we":[88],"review":[89],"compare":[91],"two":[92,109],"recently":[93],"developed":[94],"publicly":[96],"available":[97],"packages,":[99],"RegStatGel":[100,134],"Pinnacle,":[102],"analyzing":[104],"images.":[107],"These":[108],"share":[112],"some":[113,119],"common":[114],"features":[115],"also":[117,146],"fundamental":[120],"difference":[121],"in":[122,138],"aspects":[124],"quantification.":[129],"Based":[130],"on":[131,167],"our":[132],"experience,":[133],"much":[136],"better":[137],"terms":[139],"matching.":[144],"It":[145],"contains":[147],"more":[148,154],"advanced":[149],"statistical":[150,169,173],"tools":[151],"user-friendly.":[155],"contrast,":[157],"Pinnacle":[158],"quite":[160],"sensitive":[161],"background":[163],"noise":[164],"relies":[166],"external":[168],"analysis.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
