{"id":"https://openalex.org/W1972870230","doi":"https://doi.org/10.1142/s021972001100563x","title":"VERIFICATION OF PHYLOGENETIC INFERENCE PROGRAMS USING METAMORPHIC TESTING","display_name":"VERIFICATION OF PHYLOGENETIC INFERENCE PROGRAMS USING METAMORPHIC TESTING","publication_year":2011,"publication_date":"2011-06-16","ids":{"openalex":"https://openalex.org/W1972870230","doi":"https://doi.org/10.1142/s021972001100563x","mag":"1972870230","pmid":"https://pubmed.ncbi.nlm.nih.gov/22084011"},"language":"en","primary_location":{"id":"doi:10.1142/s021972001100563x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972001100563x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/journal_contribution/Verification_of_phylogenetic_inference_programs_using_metamorphic_testing/22959905","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"MD. SHAIK SADI","orcid":null},"institutions":[{"id":"https://openalex.org/I57093077","display_name":"Swinburne University of Technology","ror":"https://ror.org/031rekg67","country_code":"AU","type":"education","lineage":["https://openalex.org/I57093077"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"MD. SHAIK SADI","raw_affiliation_strings":["Faculty of ICT, Swinburne University of Technology, VIC, Australia","Faculty of ICT, Swinburne University of Technology, VIC, Australia#TAB#"],"affiliations":[{"raw_affiliation_string":"Faculty of ICT, Swinburne University of Technology, VIC, Australia","institution_ids":["https://openalex.org/I57093077"]},{"raw_affiliation_string":"Faculty of ICT, Swinburne University of Technology, VIC, Australia#TAB#","institution_ids":["https://openalex.org/I57093077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026939136","display_name":"Fei\u2010Ching Kuo","orcid":null},"institutions":[{"id":"https://openalex.org/I57093077","display_name":"Swinburne University of Technology","ror":"https://ror.org/031rekg67","country_code":"AU","type":"education","lineage":["https://openalex.org/I57093077"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"FEI-CHING KUO","raw_affiliation_strings":["Faculty of ICT, Swinburne University of Technology, VIC, Australia","Faculty of ICT, Swinburne University of Technology, VIC, Australia#TAB#"],"affiliations":[{"raw_affiliation_string":"Faculty of ICT, Swinburne University of Technology, VIC, Australia","institution_ids":["https://openalex.org/I57093077"]},{"raw_affiliation_string":"Faculty of ICT, Swinburne University of Technology, VIC, Australia#TAB#","institution_ids":["https://openalex.org/I57093077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028008500","display_name":"Joshua W. K. Ho","orcid":"https://orcid.org/0000-0003-2331-7011"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]},{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"JOSHUA W. K. HO","raw_affiliation_strings":["School of Information Technology, The University of Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"School of Information Technology, The University of Sydney, NSW, Australia","institution_ids":["https://openalex.org/I114017466","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028874636","display_name":"Michael Charleston","orcid":"https://orcid.org/0000-0001-8385-341X"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"MICHAEL A. CHARLESTON","raw_affiliation_strings":["School of Information Technology, Centre for Mathematical Biology, and Sydney Institute for Emerging Infectious Diseases, The University of Sydney, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"School of Information Technology, Centre for Mathematical Biology, and Sydney Institute for Emerging Infectious Diseases, The University of Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035107113","display_name":"Tsong Yueh Chen","orcid":"https://orcid.org/0000-0003-3578-0994"},"institutions":[{"id":"https://openalex.org/I57093077","display_name":"Swinburne University of Technology","ror":"https://ror.org/031rekg67","country_code":"AU","type":"education","lineage":["https://openalex.org/I57093077"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"T. Y. CHEN","raw_affiliation_strings":["Faculty of ICT, Swinburne University of Technology, VIC, Australia","Faculty of ICT, Swinburne University of Technology, VIC, Australia#TAB#"],"affiliations":[{"raw_affiliation_string":"Faculty of ICT, Swinburne University of Technology, VIC, Australia","institution_ids":["https://openalex.org/I57093077"]},{"raw_affiliation_string":"Faculty of ICT, Swinburne University of Technology, VIC, Australia#TAB#","institution_ids":["https://openalex.org/I57093077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I57093077"],"apc_list":null,"apc_paid":null,"fwci":0.5336,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.64647922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"09","issue":"06","first_page":"729","last_page":"747"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.8653448820114136},{"id":"https://openalex.org/keywords/oracle","display_name":"Oracle","score":0.8162758350372314},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7132012844085693},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.684333860874176},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6748420000076294},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5432660579681396},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4188002049922943},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3622109889984131},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3499947190284729},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3102099299430847},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1747385859489441},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16807714104652405},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07186564803123474}],"concepts":[{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.8653448820114136},{"id":"https://openalex.org/C55166926","wikidata":"https://www.wikidata.org/wiki/Q2892946","display_name":"Oracle","level":2,"score":0.8162758350372314},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7132012844085693},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.684333860874176},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6748420000076294},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5432660579681396},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4188002049922943},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3622109889984131},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3499947190284729},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3102099299430847},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1747385859489441},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16807714104652405},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07186564803123474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1142/s021972001100563x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972001100563x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:22084011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22084011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:ecite.utas.edu.au:121375","is_oa":false,"landing_page_url":"http://ecite.utas.edu.au/121375","pdf_url":null,"source":{"id":"https://openalex.org/S4306401569","display_name":"eCite Digital Repository (University of Tasmania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129801699","host_organization_name":"University of Tasmania","host_organization_lineage":["https://openalex.org/I129801699"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Refereed Article"},{"id":"pmh:oai:figshare.com:article/22959905","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Verification_of_phylogenetic_inference_programs_using_metamorphic_testing/22959905","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:researchbank.swinburne.edu.au:042e141a-9424-45f1-b641-3be15686e73e/1","is_oa":false,"landing_page_url":"http://hdl.handle.net/1959.3/205778","pdf_url":null,"source":{"id":"https://openalex.org/S4306401157","display_name":"Swinburne Research Bank (Swinburne University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I57093077","host_organization_name":"Swinburne University of Technology","host_organization_lineage":["https://openalex.org/I57093077"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Bioinformatics and Computational Biology, Vol. 9, no. 6 (Dec 2011), pp. 729-747","raw_type":""}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/22959905","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Verification_of_phylogenetic_inference_programs_using_metamorphic_testing/22959905","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1575134999","https://openalex.org/W1608397552","https://openalex.org/W2003603552","https://openalex.org/W2062275397","https://openalex.org/W2091093620","https://openalex.org/W2097110854","https://openalex.org/W2110899053","https://openalex.org/W2117752525","https://openalex.org/W2122363242","https://openalex.org/W2137084536","https://openalex.org/W2141933055","https://openalex.org/W2156521045","https://openalex.org/W2161444534","https://openalex.org/W4233815609","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3008339103","https://openalex.org/W2404647514","https://openalex.org/W1667647204","https://openalex.org/W4247536566","https://openalex.org/W3119814709","https://openalex.org/W2018477250","https://openalex.org/W2362218761","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W2088120817"],"abstract_inverted_index":{"Many":[0],"phylogenetic":[1,128,152,183],"inference":[2,129,153,184],"programs":[3,23,185],"are":[4,24],"available":[5],"to":[6,27,41,69,79,109,122,135,145,165],"infer":[7,28],"evolutionary":[8,30,56],"relationships":[9],"among":[10],"taxa":[11],"using":[12],"aligned":[13],"sequences":[14],"of":[15,32,46,82,98,113,126,169,189],"characters,":[16],"typically":[17],"DNA":[18],"or":[19],"amino":[20],"acids.":[21],"These":[22],"often":[25,84],"used":[26,157],"the":[29,44,47,54,80,83,95,111,114,124,147,167],"history":[31,57],"species.":[33],"However,":[34],"in":[35,77,150,181],"most":[36],"cases":[37],"it":[38,65,119],"is":[39,58,66,75,92,102],"impossible":[40,68],"systematically":[42],"verify":[43,70,110],"correctness":[45,112,125],"tree":[48,74],"returned":[49,115],"by":[50],"these":[51],"programs,":[52],"as":[53,94],"correct":[55,76],"generally":[59],"unknown":[60],"and":[61,87,160,172],"unknowable.":[62],"In":[63],"addition,":[64],"nearly":[67],"whether":[71],"any":[72,127],"non-trivial":[73],"accordance":[78],"specification":[81],"complicated":[85],"search":[86],"scoring":[88],"algorithms.":[89],"This":[90,117],"difficulty":[91],"known":[93],"oracle":[96,104,148],"problem":[97,149],"software":[99,139],"testing:":[100],"there":[101],"no":[103],"that":[105,174],"we":[106,132],"can":[107,177],"use":[108],"tree.":[116],"makes":[118],"very":[120],"challenging":[121],"test":[123,163,190],"programs.":[130,154],"Here,":[131],"demonstrate":[133],"how":[134],"apply":[136],"a":[137],"simple":[138],"testing":[140,151,176],"technique,":[141],"called":[142],"Metamorphic":[143],"Testing,":[144],"alleviate":[146],"We":[155],"have":[156],"both":[158,187],"real":[159],"randomly":[161],"generated":[162],"inputs":[164],"evaluate":[166],"effectiveness":[168],"metamorphic":[170,175],"testing,":[171],"found":[173],"detect":[178],"failures":[179],"effectively":[180],"faulty":[182],"with":[186],"types":[188],"inputs.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-23T09:07:50.710637","created_date":"2025-10-10T00:00:00"}
