{"id":"https://openalex.org/W1972826960","doi":"https://doi.org/10.1142/s0219720008003898","title":"HAPLOTYPE INFERENCE AND BLOCK PARTITIONING IN MIXED POPULATION SAMPLES","display_name":"HAPLOTYPE INFERENCE AND BLOCK PARTITIONING IN MIXED POPULATION SAMPLES","publication_year":2008,"publication_date":"2008-12-01","ids":{"openalex":"https://openalex.org/W1972826960","doi":"https://doi.org/10.1142/s0219720008003898","mag":"1972826960","pmid":"https://pubmed.ncbi.nlm.nih.gov/19090023"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720008003898","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720008003898","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103431079","display_name":"Nadezhda Sazonova","orcid":null},"institutions":[{"id":"https://openalex.org/I16944753","display_name":"Clarkson University","ror":"https://ror.org/03rwgpn18","country_code":"US","type":"education","lineage":["https://openalex.org/I16944753"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"NADEZHDA SAZONOVA","raw_affiliation_strings":["Department of Mathematics and Computer Science, Clarkson University, Potsdam, NY 13676, USA","Department of Mathematics and Computer Science , Clarkson University Potsdam , NY, 13676, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Clarkson University, Potsdam, NY 13676, USA","institution_ids":["https://openalex.org/I16944753"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science , Clarkson University Potsdam , NY, 13676, USA","institution_ids":["https://openalex.org/I16944753"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112070002","display_name":"E. James Harner","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. JAMES HARNER","raw_affiliation_strings":["Department of Statistics, West Virginia University, Morgantown, WV 26505, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, West Virginia University, Morgantown, WV 26505, USA","institution_ids":["https://openalex.org/I12097938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5103431079"],"corresponding_institution_ids":["https://openalex.org/I16944753"],"apc_list":null,"apc_paid":null,"fwci":0.1862,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60181595,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"06","issue":"06","first_page":"1177","last_page":"1192"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.8842098116874695},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7132896184921265},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6750081181526184},{"id":"https://openalex.org/keywords/population-stratification","display_name":"Population stratification","score":0.5746332406997681},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.5306181907653809},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4391504228115082},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.43263566493988037},{"id":"https://openalex.org/keywords/haplotype-estimation","display_name":"Haplotype estimation","score":0.43114417791366577},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.4007713794708252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3509597182273865},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3097289204597473},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.27460604906082153},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25644451379776},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20129939913749695},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.09100562334060669},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08427482843399048}],"concepts":[{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.8842098116874695},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7132896184921265},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6750081181526184},{"id":"https://openalex.org/C166976648","wikidata":"https://www.wikidata.org/wiki/Q7229824","display_name":"Population stratification","level":5,"score":0.5746332406997681},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.5306181907653809},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4391504228115082},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.43263566493988037},{"id":"https://openalex.org/C44432683","wikidata":"https://www.wikidata.org/wiki/Q17145705","display_name":"Haplotype estimation","level":5,"score":0.43114417791366577},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4007713794708252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3509597182273865},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3097289204597473},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27460604906082153},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25644451379776},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20129939913749695},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.09100562334060669},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08427482843399048},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720008003898","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720008003898","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:19090023","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19090023","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1592229852","https://openalex.org/W1886810706","https://openalex.org/W1964901903","https://openalex.org/W2058401000","https://openalex.org/W2075536212","https://openalex.org/W2083333719","https://openalex.org/W2085406197","https://openalex.org/W2098126593","https://openalex.org/W2101813098","https://openalex.org/W2103647262","https://openalex.org/W2106353408","https://openalex.org/W2108214367","https://openalex.org/W2110755408","https://openalex.org/W2110855483","https://openalex.org/W2115837368","https://openalex.org/W2118914609","https://openalex.org/W2122007969","https://openalex.org/W2129932093","https://openalex.org/W2133275384","https://openalex.org/W2134257327","https://openalex.org/W2134866233","https://openalex.org/W2145371252","https://openalex.org/W2148527326","https://openalex.org/W2152664025","https://openalex.org/W2158489424","https://openalex.org/W2217809488"],"related_works":["https://openalex.org/W2105845028","https://openalex.org/W1982581704","https://openalex.org/W2468405568","https://openalex.org/W2170167789","https://openalex.org/W1522648572","https://openalex.org/W2066735477","https://openalex.org/W2545986793","https://openalex.org/W49128561","https://openalex.org/W2067047548","https://openalex.org/W1750162611"],"abstract_inverted_index":{"Multi-population":[0],"haplotype":[1,24,64,81,100,143,187],"inference":[2,65,101,144],"and":[3,35,102,183,189],"block":[4,25,87,103,137,190],"partitioning":[5,104,191],"is":[6],"a":[7,95,106,122,153],"difficult":[8],"task":[9],"when":[10,48,114],"dealing":[11],"with":[12,69,85,135],"mixed":[13,80,107,123],"genotype":[14,83,124],"samples.":[15],"A":[16],"number":[17],"of":[18,32,59,78,109,133,147,155,166,175,178],"studies":[19,62],"have":[20],"shown":[21],"that":[22,98],"the":[23,30,49,53,60,79,115,126,186,193],"structures,":[26],"as":[27,29],"well":[28],"collections":[31],"common":[33],"haplotypes":[34],"their":[36],"frequencies,":[37],"vary":[38],"significantly":[39],"among":[40],"world":[41],"populations.":[42],"These":[43],"differences":[44],"are":[45,55,118],"more":[46,56],"extreme":[47],"geographical":[50],"locations":[51],"for":[52,76,170,192],"populations":[54,113],"distant.":[57],"Some":[58],"previous":[61],"performed":[63],"in":[66,105,139],"multi-population":[67],"samples":[68,84],"known":[70],"population":[71,116,171,181],"assignment.":[72],"Others":[73],"developed":[74],"algorithms":[75,169],"clustering":[77],"or":[82,89],"different":[86,136],"structures":[88,138],"genetic":[90],"marker":[91],"profiles.":[92],"We":[93],"present":[94],"new":[96],"algorithm":[97,128,159],"performs":[99],"sample":[108],"genotypes":[110,134],"from":[111],"two":[112,131,167],"assignments":[117,162],"not":[119],"known.":[120],"Given":[121],"sample,":[125],"proposed":[127],"(HAPLOCLUST)":[129],"extracts":[130],"clusters":[132],"addition":[140],"to":[141,164],"performing":[142,179],"on":[145,152],"each":[146],"these":[148],"clusters.":[149,195],"When":[150],"tested":[151],"set":[154],"unrelated":[156],"individuals,":[157],"our":[158],"provides":[160],"correct":[161],"comparable":[163],"those":[165],"state-of-the-art":[168],"stratification.":[172],"The":[173],"contribution":[174],"HAPLOCLUST":[176],"consists":[177],"haplotype/block-based":[180],"stratification":[182],"simultaneously":[184],"finding":[185],"resolution":[188],"extracted":[194]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
