{"id":"https://openalex.org/W2044958450","doi":"https://doi.org/10.1142/s021972000700320x","title":"RETRIEVING MUTATION-SPECIFIC INFORMATION FOR HUMAN PROTEINS IN UNIPROT/SWISS-PROT KNOWLEDGEBASE","display_name":"RETRIEVING MUTATION-SPECIFIC INFORMATION FOR HUMAN PROTEINS IN UNIPROT/SWISS-PROT KNOWLEDGEBASE","publication_year":2007,"publication_date":"2007-12-01","ids":{"openalex":"https://openalex.org/W2044958450","doi":"https://doi.org/10.1142/s021972000700320x","mag":"2044958450","pmid":"https://pubmed.ncbi.nlm.nih.gov/18172926"},"language":"en","primary_location":{"id":"doi:10.1142/s021972000700320x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972000700320x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005171699","display_name":"Yum L. Yip","orcid":null},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"YUM LINA YIP","raw_affiliation_strings":["Department of Structural Biology and Bioinformatics, University of Geneva, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland","Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Bioinformatics, University of Geneva, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026131672","display_name":"Nathalie Lachenal","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"NATHALIE LACHENAL","raw_affiliation_strings":["Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061951641","display_name":"Violaine Pillet","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"VIOLAINE PILLET","raw_affiliation_strings":["Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108470417","display_name":"Anne\u2010Lise Veuthey","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"ANNE-LISE VEUTHEY","raw_affiliation_strings":["Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1, rue Michel-Servet, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6195,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.84599606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"05","issue":"06","first_page":"1215","last_page":"1231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9686316251754761},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6853373050689697},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5970509052276611},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5033950209617615},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47737643122673035},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.47055840492248535},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3454540967941284},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23233193159103394},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.21352702379226685},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2013588845729828}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9686316251754761},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6853373050689697},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5970509052276611},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5033950209617615},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47737643122673035},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.47055840492248535},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3454540967941284},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23233193159103394},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.21352702379226685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2013588845729828}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1142/s021972000700320x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021972000700320x","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:18172926","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18172926","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2010595044","https://openalex.org/W2018740767","https://openalex.org/W2020620545","https://openalex.org/W2023568503","https://openalex.org/W2041476397","https://openalex.org/W2045389157","https://openalex.org/W2048501271","https://openalex.org/W2058856481","https://openalex.org/W2059044388","https://openalex.org/W2065673054","https://openalex.org/W2131234009","https://openalex.org/W2131285447","https://openalex.org/W2148853951","https://openalex.org/W2161062388","https://openalex.org/W2162629891","https://openalex.org/W2217809488"],"related_works":["https://openalex.org/W2773184276","https://openalex.org/W2161189461","https://openalex.org/W2972635466","https://openalex.org/W2803517106","https://openalex.org/W2106830745","https://openalex.org/W1994428965","https://openalex.org/W1967142621","https://openalex.org/W4240507550","https://openalex.org/W2161062388","https://openalex.org/W2095400231"],"abstract_inverted_index":{"The":[0,56,123,167],"UniProt/Swiss-Prot":[1],"Knowledgebase":[2],"records":[3],"about":[4],"30,500":[5],"variants":[6,15],"in":[7,174],"5,664":[8,129],"proteins":[9,130],"(Release":[10],"52.2).":[11],"Most":[12],"of":[13,35,63,74,81,87,105,120,153],"these":[14],"are":[16],"manually":[17],"curated":[18],"single":[19],"amino":[20],"acid":[21],"polymorphisms":[22],"(SAPs)":[23],"with":[24,131],"references":[25,177,182],"to":[26,31,39,42,51,92,115,127,142,163,171,190],"the":[27,33,61,70,85,88,103,128,156,191,194],"literature.":[28],"In":[29],"order":[30],"keep":[32],"list":[34,152],"published":[36],"documents":[37],"related":[38],"SAPs":[40,185],"up":[41],"date,":[43],"an":[44],"automatic":[45],"information":[46],"retrieval":[47,89],"method":[48,57,124,168],"is":[49,58,113],"developed":[50],"recover":[52,164],"texts":[53],"mentioning":[54],"SAPs.":[55],"based":[59],"on":[60,178,183],"use":[62,104],"regular":[64],"expressions":[65],"(patterns)":[66],"and":[67,72,109,150],"rules":[68],"for":[69],"detection":[71,158],"validation":[73],"mutations.":[75],"When":[76],"evaluated":[77],"using":[78,145],"a":[79,117,139,151],"corpus":[80],"9,820":[82],"PubMed":[83,140],"references,":[84],"precision":[86],"was":[90,99,125,134,160,169],"determined":[91],"be":[93,172,187],"89.5%":[94],"over":[95],"all":[96],"variants.":[97,132],"It":[98],"also":[100],"found":[101,170],"that":[102],"nonstandard":[106],"mutation":[107],"nomenclature":[108],"sequence":[110],"positional":[111],"correction":[112],"necessary":[114],"retrieve":[116,143],"significant":[118],"number":[119],"relevant":[121,165],"articles.":[122],"applied":[126],"This":[133],"performed":[135],"by":[136],"first":[137],"submitting":[138],"query":[141],"articles":[144],"gene":[146],"or":[147],"protein":[148],"names":[149],"mutation-related":[154],"keywords;":[155],"SAP":[157],"procedure":[159],"then":[161],"used":[162],"documents.":[166],"efficient":[173],"retrieving":[175],"new":[176],"known":[179,184],"polymorphisms.":[180],"New":[181],"will":[186],"rendered":[188],"accessible":[189],"public":[192],"via":[193],"Swiss-Prot":[195],"variant":[196],"pages.":[197]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
