{"id":"https://openalex.org/W2057063483","doi":"https://doi.org/10.1142/s0219720006001953","title":"ANALYSIS OF SNP-EXPRESSION ASSOCIATION MATRICES","display_name":"ANALYSIS OF SNP-EXPRESSION ASSOCIATION MATRICES","publication_year":2006,"publication_date":"2006-04-01","ids":{"openalex":"https://openalex.org/W2057063483","doi":"https://doi.org/10.1142/s0219720006001953","mag":"2057063483","pmid":"https://pubmed.ncbi.nlm.nih.gov/16819783"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720006001953","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720006001953","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090319393","display_name":"Anya Tsalenko","orcid":null},"institutions":[{"id":"https://openalex.org/I138285227","display_name":"Agilent Technologies (United States)","ror":"https://ror.org/02tryst02","country_code":"US","type":"company","lineage":["https://openalex.org/I138285227"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"ANYA TSALENKO","raw_affiliation_strings":["Agilent Technologies, 5301 Stevens Creek Blvd, MS23, Santa Clara, CA 95051, USA"],"affiliations":[{"raw_affiliation_string":"Agilent Technologies, 5301 Stevens Creek Blvd, MS23, Santa Clara, CA 95051, USA","institution_ids":["https://openalex.org/I138285227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046958549","display_name":"Roded Sharan","orcid":"https://orcid.org/0000-0001-8363-4882"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"RODED SHARAN","raw_affiliation_strings":["School of Computer Science, Tel-Aviv University, Tel-Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Tel-Aviv University, Tel-Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032124391","display_name":"Vessela N. Kristensen","orcid":"https://orcid.org/0000-0002-1458-0304"},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"VESSELA KRISTENSEN","raw_affiliation_strings":["Department of Genetics, Institute for Cancer Research, Rikshospitalet-Radiumhospitalet Medical Centre, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Institute for Cancer Research, Rikshospitalet-Radiumhospitalet Medical Centre, Oslo, Norway","institution_ids":["https://openalex.org/I2801049993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061663383","display_name":"Hege Edvardsen","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"HEGE EDVARDSEN","raw_affiliation_strings":["Department of Genetics, Institute for Cancer Research, Rikshospitalet-Radiumhospitalet Medical Centre, Oslo, Norway","Medical Faculty, University of Norway, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Institute for Cancer Research, Rikshospitalet-Radiumhospitalet Medical Centre, Oslo, Norway","institution_ids":["https://openalex.org/I2801049993"]},{"raw_affiliation_string":"Medical Faculty, University of Norway, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107887809","display_name":"Anne\u2010Lise B\u00f8rresen\u2010Dale","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"ANNE-LISE B\u00d8RRESEN-DALE","raw_affiliation_strings":["Department of Genetics, Institute for Cancer Research, Rikshospitalet-Radiumhospitalet Medical Centre, Oslo, Norway","Medical Faculty, University of Norway, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Institute for Cancer Research, Rikshospitalet-Radiumhospitalet Medical Centre, Oslo, Norway","institution_ids":["https://openalex.org/I2801049993"]},{"raw_affiliation_string":"Medical Faculty, University of Norway, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026012663","display_name":"Amir Ben\u2010Dor","orcid":null},"institutions":[{"id":"https://openalex.org/I138285227","display_name":"Agilent Technologies (United States)","ror":"https://ror.org/02tryst02","country_code":"US","type":"company","lineage":["https://openalex.org/I138285227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"AMIR BEN-DOR","raw_affiliation_strings":["Agilent Technologies, 5301 Stevens Creek Blvd, MS23, Santa Clara, CA 95051, USA"],"affiliations":[{"raw_affiliation_string":"Agilent Technologies, 5301 Stevens Creek Blvd, MS23, Santa Clara, CA 95051, USA","institution_ids":["https://openalex.org/I138285227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002511176","display_name":"Zohar Yakhini","orcid":"https://orcid.org/0000-0002-0420-5412"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"ZOHAR YAKHINI","raw_affiliation_strings":["Agilent Technologies, 94 Em Hamoshavot Rd, Petach-Tikva 49527, Israel"],"affiliations":[{"raw_affiliation_string":"Agilent Technologies, 94 Em Hamoshavot Rd, Petach-Tikva 49527, Israel","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5090319393"],"corresponding_institution_ids":["https://openalex.org/I138285227"],"apc_list":null,"apc_paid":null,"fwci":1.3622,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.78944322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"04","issue":"02","first_page":"259","last_page":"274"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.7585614323616028},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.7211187481880188},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6696068644523621},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.6251856088638306},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.6053792238235474},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5985574126243591},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5530102849006653},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.5285735726356506},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.49061742424964905},{"id":"https://openalex.org/keywords/tag-snp","display_name":"Tag SNP","score":0.46293845772743225},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4341670274734497},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38980644941329956},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3624412417411804}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.7585614323616028},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.7211187481880188},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6696068644523621},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.6251856088638306},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.6053792238235474},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5985574126243591},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5530102849006653},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.5285735726356506},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.49061742424964905},{"id":"https://openalex.org/C55060382","wikidata":"https://www.wikidata.org/wiki/Q7675093","display_name":"Tag SNP","level":5,"score":0.46293845772743225},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4341670274734497},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38980644941329956},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3624412417411804}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1142/s0219720006001953","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720006001953","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:16819783","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16819783","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.107.8744","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.107.8744","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://conferences.computer.org/Bioinformatics/CSB2005/PDF3/18_sharanr_matrices.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.133.3688","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.133.3688","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.math.tau.ac.il/~roded/snp-exp.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6000000238418579,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1753000577","https://openalex.org/W1972442166","https://openalex.org/W2008233728","https://openalex.org/W2110065044","https://openalex.org/W2115071473","https://openalex.org/W2118308505","https://openalex.org/W2120488121","https://openalex.org/W2126449841","https://openalex.org/W2130962401","https://openalex.org/W2131994307","https://openalex.org/W2153230373","https://openalex.org/W2157840751","https://openalex.org/W4246369350"],"related_works":["https://openalex.org/W2101398264","https://openalex.org/W2168919926","https://openalex.org/W2331649876","https://openalex.org/W1504890006","https://openalex.org/W3132297604","https://openalex.org/W2050613846","https://openalex.org/W3139651602","https://openalex.org/W2377243617","https://openalex.org/W1980066896","https://openalex.org/W2351788761"],"abstract_inverted_index":{"High":[0],"throughput":[1],"expression":[2,20,37],"profiling":[3],"and":[4,39,77,108],"genotyping":[5],"technologies":[6],"provide":[7],"the":[8,12,32,45,81],"means":[9],"to":[10,53,62,79,88],"study":[11],"genetic":[13],"determinants":[14],"of":[15,35,51,65,75,102,116],"population":[16],"variation":[17],"in":[18,105],"gene":[19,36],"variation.":[21],"In":[22],"this":[23,106],"paper":[24],"we":[25],"present":[26],"a":[27,73],"general":[28],"statistical":[29],"framework":[30,49,87],"for":[31,44],"simultaneous":[33],"analysis":[34],"data":[38,42,90],"SNP":[40],"genotype":[41],"measured":[43],"same":[46],"cohort.":[47],"The":[48],"consists":[50],"methods":[52,78],"associate":[54],"transcripts":[55,66],"with":[56,72,125],"SNPs":[57,110],"affecting":[58],"their":[59],"expression,":[60],"algorithms":[61],"detect":[63],"subsets":[64],"that":[67,111,129],"share":[68],"significantly":[69],"many":[70],"associations":[71,104],"subset":[74],"SNPs,":[76],"visualize":[80],"identified":[82],"relations.":[83],"We":[84,118],"apply":[85],"our":[86],"SNP-expression":[89],"collected":[91],"from":[92],"50":[93],"breast":[94],"cancer":[95],"patients.":[96],"Our":[97],"results":[98],"demonstrate":[99],"an":[100],"overabundance":[101],"transcript-SNP":[103],"data,":[107],"pinpoint":[109],"are":[112],"potential":[113],"master":[114],"regulators":[115,128],"transcription.":[117],"also":[119],"identify":[120],"several":[121],"statistically":[122],"significant":[123],"transcript-subsets":[124],"common":[126],"putative":[127],"fall":[130],"into":[131],"well-defined":[132],"functional":[133],"categories.":[134]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
