{"id":"https://openalex.org/W2026750541","doi":"https://doi.org/10.1142/s0219720004000612","title":"EFFICIENTLY FINDING REGULATORY ELEMENTS USING CORRELATION WITH GENE EXPRESSION","display_name":"EFFICIENTLY FINDING REGULATORY ELEMENTS USING CORRELATION WITH GENE EXPRESSION","publication_year":2004,"publication_date":"2004-05-27","ids":{"openalex":"https://openalex.org/W2026750541","doi":"https://doi.org/10.1142/s0219720004000612","mag":"2026750541","pmid":"https://pubmed.ncbi.nlm.nih.gov/15297982"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720004000612","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720004000612","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011046118","display_name":"Hideo Bannai","orcid":"https://orcid.org/0000-0002-6856-5185"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"HIDEO BANNAI","raw_affiliation_strings":["Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan"],"affiliations":[{"raw_affiliation_string":"Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012002493","display_name":"Shunsuke Inenaga","orcid":"https://orcid.org/0000-0002-1833-010X"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"SHUNSUKE INENAGA","raw_affiliation_strings":["Department of Informatics, Kyushu University 33, Fukuoka 812-8581, Japan","PRESTO, Japan Science and Technology Agency (JST), Japan"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Kyushu University 33, Fukuoka 812-8581, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"PRESTO, Japan Science and Technology Agency (JST), Japan","institution_ids":["https://openalex.org/I4210086780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071075962","display_name":"Ayumi Shinohara","orcid":"https://orcid.org/0000-0002-4978-8316"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"AYUMI SHINOHARA","raw_affiliation_strings":["Department of Informatics, Kyushu University 33, Fukuoka 812-8581, Japan","PRESTO, Japan Science and Technology Agency (JST), Japan"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Kyushu University 33, Fukuoka 812-8581, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"PRESTO, Japan Science and Technology Agency (JST), Japan","institution_ids":["https://openalex.org/I4210086780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083177367","display_name":"Masayuki Takeda","orcid":"https://orcid.org/0000-0002-6138-1607"},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"MASAYUKI TAKEDA","raw_affiliation_strings":["Department of Informatics, Kyushu University 33, Fukuoka 812-8581, Japan","PRESTO, Japan Science and Technology Agency (JST), Japan"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Kyushu University 33, Fukuoka 812-8581, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"PRESTO, Japan Science and Technology Agency (JST), Japan","institution_ids":["https://openalex.org/I4210086780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088167618","display_name":"Satoru Miyano","orcid":"https://orcid.org/0000-0002-1753-6616"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"SATORU MIYANO","raw_affiliation_strings":["Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan"],"affiliations":[{"raw_affiliation_string":"Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011046118"],"corresponding_institution_ids":["https://openalex.org/I74801974"],"apc_list":null,"apc_paid":null,"fwci":6.9319,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.96630795,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"02","issue":"02","first_page":"273","last_page":"288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.630218505859375},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5792728066444397},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.49277761578559875},{"id":"https://openalex.org/keywords/upstream","display_name":"Upstream (networking)","score":0.4875008761882782},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48525547981262207},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.46055710315704346},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.44746360182762146},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.42858558893203735},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.42086130380630493},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.41510581970214844},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41440096497535706},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.4132593274116516},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3910495638847351},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3845629096031189},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3813880681991577},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2560271620750427},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.15719696879386902},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08810561895370483}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.630218505859375},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5792728066444397},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.49277761578559875},{"id":"https://openalex.org/C191172861","wikidata":"https://www.wikidata.org/wiki/Q7899321","display_name":"Upstream (networking)","level":2,"score":0.4875008761882782},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48525547981262207},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.46055710315704346},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.44746360182762146},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.42858558893203735},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.42086130380630493},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.41510581970214844},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41440096497535706},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.4132593274116516},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3910495638847351},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3845629096031189},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3813880681991577},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2560271620750427},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.15719696879386902},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08810561895370483},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720004000612","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720004000612","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:15297982","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15297982","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.219.5005","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.219.5005","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bonsai.ims.u-tokyo.ac.jp/~bannai/papers/jbcb-ltspr.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1491676266","https://openalex.org/W1532612911","https://openalex.org/W1538523662","https://openalex.org/W1586476557","https://openalex.org/W1964007348","https://openalex.org/W1975484547","https://openalex.org/W2011999472","https://openalex.org/W2017200304","https://openalex.org/W2059513841","https://openalex.org/W2090554117","https://openalex.org/W2096840519","https://openalex.org/W2103453943","https://openalex.org/W2120034091","https://openalex.org/W2135000328","https://openalex.org/W2137120608","https://openalex.org/W2144710927","https://openalex.org/W2162945593","https://openalex.org/W2533248932","https://openalex.org/W2610179052"],"related_works":["https://openalex.org/W96331545","https://openalex.org/W1548907175","https://openalex.org/W1882920571","https://openalex.org/W2583658747","https://openalex.org/W2159942118","https://openalex.org/W1517600056","https://openalex.org/W2003608043","https://openalex.org/W2160738675","https://openalex.org/W2036633468","https://openalex.org/W2396668937"],"abstract_inverted_index":{"We":[0,53,72,110],"present":[1],"an":[2],"efficient":[3],"algorithm":[4,32,77],"for":[5,34,114],"detecting":[6],"putative":[7],"regulatory":[8],"elements":[9],"in":[10,39,61,64],"the":[11,40,47,51,58,65,69,106,116,119],"upstream":[12,41,70],"DNA":[13],"sequences":[14],"of":[15,50,68,118],"genes,":[16],"using":[17,105],"gene":[18,82],"expression":[19,48,83],"information":[20],"obtained":[21],"from":[22],"microarray":[23,81],"experiments.":[24],"Based":[25],"on":[26],"a":[27],"generalized":[28],"suffix":[29],"tree,":[30],"our":[31,76,88,129],"looks":[33],"motif":[35],"patterns":[36],"whose":[37],"appearance":[38],"region":[42],"is":[43,90,121],"most":[44],"correlated":[45],"with":[46],"levels":[49],"genes.":[52],"are":[54],"able":[55,91],"to":[56,78,92,128],"find":[57],"optimal":[59],"pattern,":[60],"time":[62],"linear":[63],"total":[66],"length":[67],"sequences.":[71],"implement":[73],"and":[74,85],"apply":[75],"publicly":[79],"available":[80],"data,":[84],"show":[86],"that":[87],"method":[89,120],"discover":[93],"biologically":[94],"significant":[95],"motifs,":[96],"including":[97],"various":[98],"motifs":[99],"which":[100,115],"have":[101],"been":[102],"reported":[103],"previously":[104],"same":[107],"data":[108],"set.":[109],"further":[111],"discuss":[112],"applications":[113],"efficiency":[117],"essential,":[122],"as":[123,125],"well":[124],"possible":[126],"extensions":[127],"algorithm.":[130]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}