{"id":"https://openalex.org/W1971302364","doi":"https://doi.org/10.1142/s0219720004000363","title":"DEVELOPMENT OF IMAGE PROCESSING PROGRAM FOR YEAST CELL MORPHOLOGY","display_name":"DEVELOPMENT OF IMAGE PROCESSING PROGRAM FOR YEAST CELL MORPHOLOGY","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W1971302364","doi":"https://doi.org/10.1142/s0219720004000363","mag":"1971302364","pmid":"https://pubmed.ncbi.nlm.nih.gov/15290760"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720004000363","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720004000363","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001450103","display_name":"Miwaka Ohtani","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"MIWAKA OHTANI","raw_affiliation_strings":["Department of Computer Science, University of Tokyo, Japan","Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, 7-3-1, Hongo, Bunkyo, Tokyo 113-0033, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I161296585"]},{"raw_affiliation_string":"Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, 7-3-1, Hongo, Bunkyo, Tokyo 113-0033, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011901892","display_name":"Ayaka Saka","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"AYAKA SAKA","raw_affiliation_strings":["Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Japan","Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004954029","display_name":"F. Sano","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"FUMI SANO","raw_affiliation_strings":["Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Japan","Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060486921","display_name":"Yoshikazu Ohya","orcid":"https://orcid.org/0000-0003-0837-1239"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"YOSHIKAZU OHYA","raw_affiliation_strings":["Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Japan","Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049124202","display_name":"Shinichi Morishita","orcid":"https://orcid.org/0000-0002-6201-8885"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"SHINICHI MORISHITA","raw_affiliation_strings":["Department of Complexity Science and Engineering, Graduate School of Frontier Sciences, University of Tokyo, Japan","Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Complexity Science and Engineering, Graduate School of Frontier Sciences, University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Institute for Bioinformatics and Research and Development, Japan Science and Technology Corporation, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5001450103"],"corresponding_institution_ids":["https://openalex.org/I161296585","https://openalex.org/I74801974"],"apc_list":null,"apc_paid":null,"fwci":1.0525,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.73109482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"01","issue":"04","first_page":"695","last_page":"709"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/roundness","display_name":"Roundness (object)","score":0.7426273822784424},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.7282123565673828},{"id":"https://openalex.org/keywords/morphology","display_name":"Morphology (biology)","score":0.6823865175247192},{"id":"https://openalex.org/keywords/budding-yeast","display_name":"Budding yeast","score":0.6654753088951111},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5246182680130005},{"id":"https://openalex.org/keywords/ellipse","display_name":"Ellipse","score":0.5017223358154297},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4614260494709015},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.31318384408950806},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2655144929885864},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2131456434726715},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20749855041503906},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.15095874667167664}],"concepts":[{"id":"https://openalex.org/C14190554","wikidata":"https://www.wikidata.org/wiki/Q2496761","display_name":"Roundness (object)","level":2,"score":0.7426273822784424},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.7282123565673828},{"id":"https://openalex.org/C499950583","wikidata":"https://www.wikidata.org/wiki/Q183252","display_name":"Morphology (biology)","level":2,"score":0.6823865175247192},{"id":"https://openalex.org/C2992884146","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Budding yeast","level":4,"score":0.6654753088951111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5246182680130005},{"id":"https://openalex.org/C74261601","wikidata":"https://www.wikidata.org/wiki/Q40112","display_name":"Ellipse","level":2,"score":0.5017223358154297},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4614260494709015},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.31318384408950806},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2655144929885864},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2131456434726715},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20749855041503906},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.15095874667167664},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1142/s0219720004000363","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720004000363","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:15290760","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15290760","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1585025773","https://openalex.org/W1590458072","https://openalex.org/W1601258312","https://openalex.org/W1971060360","https://openalex.org/W1973010815","https://openalex.org/W1974985862","https://openalex.org/W2006873092","https://openalex.org/W2047942948","https://openalex.org/W2088127501","https://openalex.org/W2088468751","https://openalex.org/W2142437744","https://openalex.org/W2153283265","https://openalex.org/W2160042914","https://openalex.org/W2752885492","https://openalex.org/W2770609739","https://openalex.org/W4388386830"],"related_works":["https://openalex.org/W2001703407","https://openalex.org/W2171263406","https://openalex.org/W1965635048","https://openalex.org/W2059086631","https://openalex.org/W2909148680","https://openalex.org/W769743217","https://openalex.org/W2152745412","https://openalex.org/W50091167","https://openalex.org/W4254624898","https://openalex.org/W1515773506"],"abstract_inverted_index":{"Every":[0],"living":[1],"organism":[2],"has":[3],"its":[4],"own":[5],"species-specific":[6],"morphology.":[7],"Despite":[8],"the":[9,18,27,45,98,103,106],"relatively":[10],"simple":[11],"ellipsoidal":[12],"shape":[13],"of":[14,21,48,105],"budding":[15],"yeast":[16,22,49,77,126],"cells,":[17],"global":[19],"regulation":[20],"morphology":[23,37,78,127],"remains":[24],"unclear.":[25],"In":[26],"past,":[28],"each":[29],"mutated":[30],"gene":[31],"from":[32,62],"many":[33],"mutants":[34],"with":[35],"abnormal":[36],"had":[38],"to":[39,97,108],"be":[40],"classified":[41],"manually.":[42],"To":[43],"investigate":[44],"morphological":[46],"characteristics":[47],"in":[50,125],"detail,":[51],"we":[52],"developed":[53],"a":[54,121],"novel":[55],"image-processing":[56,117],"program":[57,67,107,118],"that":[58,72,115],"extracts":[59,68],"quantitative":[60,110],"data":[61,69],"microscope":[63],"images":[64],"automatically.":[65],"This":[66],"on":[70],"cells":[71],"are":[73],"often":[74],"used":[75],"by":[76],"researchers,":[79],"such":[80],"as":[81],"cell":[82,99],"size,":[83],"roundness,":[84],"bud":[85,90],"neck":[86],"position":[87],"angle,":[88],"and":[89,93],"growth":[91],"direction,":[92],"fits":[94],"an":[95],"ellipse":[96],"outline.":[100],"We":[101],"evaluated":[102],"ability":[104],"extract":[109],"parameters.":[111],"The":[112],"results":[113],"suggest":[114],"our":[116],"can":[119],"play":[120],"central":[122],"objective":[123],"role":[124],"studies.":[128]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
