{"id":"https://openalex.org/W2047330249","doi":"https://doi.org/10.1142/s0219720003000137","title":"Identification of Biological Relationships from Text Documents Using Efficient Computational Methods","display_name":"Identification of Biological Relationships from Text Documents Using Efficient Computational Methods","publication_year":2003,"publication_date":"2003-07-01","ids":{"openalex":"https://openalex.org/W2047330249","doi":"https://doi.org/10.1142/s0219720003000137","mag":"2047330249","pmid":"https://pubmed.ncbi.nlm.nih.gov/15290775"},"language":"en","primary_location":{"id":"doi:10.1142/s0219720003000137","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720003000137","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044460012","display_name":"Mathew Palakal","orcid":"https://orcid.org/0000-0002-2990-0999"},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathew Palakal","raw_affiliation_strings":["Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082762217","display_name":"Matthew J. Stephens","orcid":"https://orcid.org/0000-0001-7593-4578"},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Stephens","raw_affiliation_strings":["Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106085532","display_name":"Snehasis Mukhopadhyay","orcid":null},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Snehasis Mukhopadhyay","raw_affiliation_strings":["Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057327322","display_name":"Rajeev Raje","orcid":null},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rajeev Raje","raw_affiliation_strings":["Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer &amp; Information Science,  Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280,  Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer &amp; Information Science, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033037996","display_name":"Simon J. Rhodes","orcid":null},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon Rhodes","raw_affiliation_strings":["Department of Biology,  Indiana University Purdue University Indianapolis,  723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","Department of Biology, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology,  Indiana University Purdue University Indianapolis,  723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Biology, Indiana University Purdue University Indianapolis, 723 West Michigan St. SL 280, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9122,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.7187992,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"01","issue":"02","first_page":"307","last_page":"342"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.785250186920166},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.708041250705719},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6886682510375977},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6146113276481628},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5941555500030518},{"id":"https://openalex.org/keywords/synonym","display_name":"Synonym (taxonomy)","score":0.5866667032241821},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4388481378555298},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43874481320381165},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4369153082370758},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.43042534589767456},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.4267083704471588},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4224834740161896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11175099015235901}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.785250186920166},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.708041250705719},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6886682510375977},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6146113276481628},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5941555500030518},{"id":"https://openalex.org/C173483453","wikidata":"https://www.wikidata.org/wiki/Q1040689","display_name":"Synonym (taxonomy)","level":3,"score":0.5866667032241821},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4388481378555298},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43874481320381165},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4369153082370758},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.43042534589767456},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.4267083704471588},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4224834740161896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11175099015235901},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219720003000137","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219720003000137","pdf_url":null,"source":{"id":"https://openalex.org/S155349577","display_name":"Journal of Bioinformatics and Computational Biology","issn_l":"0219-7200","issn":["0219-7200","1757-6334"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311754","host_organization_name":"Imperial College Press","host_organization_lineage":["https://openalex.org/P4310311754"],"host_organization_lineage_names":["Imperial College Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Bioinformatics and Computational Biology","raw_type":"journal-article"},{"id":"pmid:15290775","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15290775","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of bioinformatics and computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.459.6248","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.459.6248","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ai.arizona.edu/mis596A/book_chapters/medinfo/Chapter_16.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8100000023841858,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W182831726","https://openalex.org/W1592053870","https://openalex.org/W1712279155","https://openalex.org/W1987146951","https://openalex.org/W2038721957","https://openalex.org/W2055043387","https://openalex.org/W2095800292","https://openalex.org/W2096146054","https://openalex.org/W2117400858","https://openalex.org/W2127230663","https://openalex.org/W2130260860","https://openalex.org/W2134769633","https://openalex.org/W2152698860","https://openalex.org/W2158505321","https://openalex.org/W3143770986","https://openalex.org/W3214380909","https://openalex.org/W4235505822","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2364370872","https://openalex.org/W2053269318","https://openalex.org/W2025614924","https://openalex.org/W2294335174","https://openalex.org/W2097963413","https://openalex.org/W1591475660","https://openalex.org/W2001275470","https://openalex.org/W3145575561","https://openalex.org/W2164162849","https://openalex.org/W2559776840"],"abstract_inverted_index":{"The":[0,21,64,131],"biological":[1,40,51,62,70,122,227],"literature":[2],"databases":[3],"continue":[4],"to":[5,60,68,83,101,117,156,160],"grow":[6],"rapidly":[7],"with":[8],"vital":[9],"information":[10,28],"that":[11,124],"is":[12],"important":[13,57],"for":[14,27,38,58,185,220],"conducting":[15],"sound":[16],"biomedical":[17],"research":[18],"and":[19,29,43,80,139,142,151,192,223],"development.":[20],"current":[22],"practices":[23],"of":[24,165,176,205,213],"manually":[25],"searching":[26],"extracting":[30,143,166],"pertinent":[31],"knowledge":[32],"are":[33,56,125,154,218],"tedious,":[34],"time-consuming":[35],"tasks":[36],"even":[37],"motivated":[39],"researchers.":[41],"Accurate":[42],"computationally":[44],"efficient":[45],"approaches":[46],"in":[47,127],"discovering":[48],"relationships":[49,119,202],"between":[50,120],"objects":[52,123],"from":[53,226],"text":[54,129],"documents":[55],"biologists":[59],"develop":[61],"models.":[63],"term":[65],"\"object\"":[66],"refers":[67,82],"any":[69,84],"entity":[71],"such":[72,104],"as":[73],"a":[74,114,128,174,211],"protein,":[75],"gene,":[76],"cell":[77],"cycle,":[78],"etc.":[79],"relationship":[81,195,224],"dynamic":[85],"action":[86],"one":[87,98,177],"object":[88,99,103,134,187],"has":[89],"on":[90],"another,":[91],"e.g.":[92],"protein":[93,96],"inhibiting":[94],"another":[95,102],"or":[97],"belonging":[100],"as,":[105],"the":[106,158,162,186,194,198],"cells":[107],"composing":[108],"an":[109],"organ.":[110],"This":[111],"paper":[112],"presents":[113],"novel":[115],"approach":[116,132],"extract":[118],"multiple":[121],"present":[126],"document.":[130],"involves":[133],"identification,":[135],"reference":[136],"resolution,":[137],"ontology":[138],"synonym":[140,190],"discovery,":[141,191],"object-object":[144,167],"relationships.":[145,168],"Hidden":[146],"Markov":[147],"Models":[148],"(HMMs),":[149],"dictionaries,":[150],"N-Gram":[152],"models":[153],"used":[155],"set":[157],"framework":[159],"tackle":[161],"complex":[163],"task":[164],"Experiments":[169],"were":[170,183,203,208],"carried":[171],"out":[172],"using":[173],"corpus":[175],"thousand":[178,199],"Medline":[179],"abstracts.":[180],"Intermediate":[181],"results":[182,217],"obtained":[184],"identification":[188,222],"process,":[189],"finally":[193],"extraction.":[196],"For":[197],"abstracts,":[200],"53":[201],"extracted":[204],"which":[206],"43":[207],"correct,":[209],"giving":[210],"specificity":[212],"81":[214],"percent.":[215],"These":[216],"promising":[219],"multi-object":[221],"finding":[225],"documents.":[228]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
