{"id":"https://openalex.org/W2042236971","doi":"https://doi.org/10.1142/s0219649209002191","title":"Automated Gene-Retrieval System for Biological Information Needs","display_name":"Automated Gene-Retrieval System for Biological Information Needs","publication_year":2009,"publication_date":"2009-03-01","ids":{"openalex":"https://openalex.org/W2042236971","doi":"https://doi.org/10.1142/s0219649209002191","mag":"2042236971"},"language":"en","primary_location":{"id":"doi:10.1142/s0219649209002191","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219649209002191","pdf_url":null,"source":{"id":"https://openalex.org/S30163770","display_name":"Journal of Information & Knowledge Management","issn_l":"0219-6492","issn":["0219-6492","1793-6926"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Information &amp; Knowledge Management","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088087251","display_name":"Imad Rahal","orcid":"https://orcid.org/0009-0004-3231-0115"},"institutions":[{"id":"https://openalex.org/I142823887","display_name":"St. John's University","ror":"https://ror.org/00bgtad15","country_code":"US","type":"education","lineage":["https://openalex.org/I142823887"]},{"id":"https://openalex.org/I84360360","display_name":"College of Saint Benedict and Saint John's University","ror":"https://ror.org/00watgv28","country_code":"US","type":"education","lineage":["https://openalex.org/I84360360"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Imad Rahal","raw_affiliation_strings":["Computer Science Department, College of St. Benedict &amp; St. John's University, Collegeville, MN 56321, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, College of St. Benedict &amp; St. John's University, Collegeville, MN 56321, USA","institution_ids":["https://openalex.org/I84360360","https://openalex.org/I142823887"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102015817","display_name":"Bao-Ying Wang","orcid":"https://orcid.org/0000-0002-7824-4457"},"institutions":[{"id":"https://openalex.org/I75929663","display_name":"Waynesburg University","ror":"https://ror.org/02sbj8547","country_code":"US","type":"education","lineage":["https://openalex.org/I75929663"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baoying Wang","raw_affiliation_strings":["Department of Math/Computer Science, Waynesburg University, Waynesburg, PA 15370, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Math/Computer Science, Waynesburg University, Waynesburg, PA 15370, USA","institution_ids":["https://openalex.org/I75929663"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006899243","display_name":"Riad Rahhal","orcid":"https://orcid.org/0000-0002-3326-1042"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Riad Rahhal","raw_affiliation_strings":["Pediatrics Department, University of Iowa, Iowa City, IA 52242, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pediatrics Department, University of Iowa, Iowa City, IA 52242, USA","institution_ids":["https://openalex.org/I126307644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12270189,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"08","issue":"01","first_page":"13","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9757999777793884,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6980340480804443},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6595338582992554},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6473119258880615},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5979970097541809},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5298373699188232},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5165854692459106},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4706871807575226},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.4698057770729065},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.42209142446517944},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4119037389755249},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3296641707420349},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31636062264442444},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18648666143417358},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11947494745254517}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6980340480804443},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6595338582992554},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6473119258880615},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5979970097541809},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5298373699188232},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5165854692459106},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4706871807575226},{"id":"https://openalex.org/C2780104201","wikidata":"https://www.wikidata.org/wiki/Q130888","display_name":"Drosophila melanogaster","level":3,"score":0.4698057770729065},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.42209142446517944},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4119037389755249},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3296641707420349},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31636062264442444},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18648666143417358},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11947494745254517},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219649209002191","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219649209002191","pdf_url":null,"source":{"id":"https://openalex.org/S30163770","display_name":"Journal of Information & Knowledge Management","issn_l":"0219-6492","issn":["0219-6492","1793-6926"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Information &amp; Knowledge Management","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:wsi:jikmxx:v:08:y:2009:i:01:n:s0219649209002191","is_oa":false,"landing_page_url":"http://www.worldscientific.com/doi/abs/10.1142/S0219649209002191","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:RePEc:wsi:jikmxx:v:08:y:2009:i:01:p:13-23","is_oa":false,"landing_page_url":"http://www.worldscinet.com/cgi-bin/details.cgi?type=html&amp;id=pii:S0219649209002191","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5799999833106995,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1483363854","https://openalex.org/W1566012138","https://openalex.org/W1978394996","https://openalex.org/W1990347601","https://openalex.org/W2001496424","https://openalex.org/W2061681234","https://openalex.org/W2115159360","https://openalex.org/W2133771440","https://openalex.org/W2140190241","https://openalex.org/W2151819598","https://openalex.org/W3034343346"],"related_works":["https://openalex.org/W2587366952","https://openalex.org/W2393920775","https://openalex.org/W2014093629","https://openalex.org/W3216649527","https://openalex.org/W4230768823","https://openalex.org/W4238951837","https://openalex.org/W2332869616","https://openalex.org/W2150136235","https://openalex.org/W2041353081","https://openalex.org/W2581240705"],"abstract_inverted_index":{"In":[0,71],"this":[1,72,158,199],"day":[2],"and":[3,21,33,88,126,142,147,153,180],"age,":[4],"conducting":[5],"a":[6,11,36,83,96,106],"biological":[7,55,98,107,114,130,140],"experiment":[8,100],"is":[9,59,203,216],"presumably":[10],"very":[12,60],"expensive":[13,22],"procedure":[14],"largely":[15,62],"owing":[16,63],"to":[17,50,64,95,104,136,186],"the":[18,26,51,65,113,129,162,166,175,187,193,217,223,233],"highly":[19],"sophisticated":[20],"equipment":[23],"necessitated":[24],"by":[25,121,160],"process.":[27],"Conceivably,":[28],"being":[29],"capable":[30,80,204],"of":[31,39,47,81,86,116,145,168,177,205,214,219],"isolating":[32],"focusing":[34],"on":[35,192,232],"smaller":[37],"set":[38],"imperative":[40],"genes":[41,87,146,179],"or":[42,54,101],"gene":[43,89,181,194],"products":[44,90,182],"that":[45,91,112],"are":[46,92,155],"high":[48],"relevance":[49],"experiment,":[52],"pathway,":[53,99],"system":[56,79,102],"under":[57],"investigation":[58],"desirable":[61],"potential":[66],"savings":[67],"in":[68,133,165,222,237],"experimental":[69,230],"costs.":[70],"work,":[73],"we":[74,228],"propose":[75],"an":[76],"intelligent":[77],"information":[78],"generating":[82],"ranked":[84],"list":[85],"most":[93],"pertinent":[94],"given":[97,209],"(referred":[103],"as":[105],"context":[108,115],"henceforth).":[109],"We":[110],"assume":[111],"interest":[117],"can":[118],"be":[119],"described":[120],"various":[122,137],"textual":[123],"query":[124],"terms":[125,190],"phrases":[127],"from":[128,172],"domain":[131],"which,":[132],"turn,":[134],"relate":[135],"molecular":[138],"functions,":[139],"processes":[141],"cellular":[143],"components":[144],"their":[148],"products.":[149],"Intelligent":[150],"text-based":[151],"analyses":[152],"mining":[154],"utilised":[156],"for":[157],"purpose":[159],"using":[161],"published":[163],"literature,":[164],"form":[167],"publication":[169],"abstracts":[170],"downloaded":[171],"PubMed,":[173],"with":[174],"intention":[176],"ranking":[178],"having":[183],"identified":[184],"relationships":[185],"specified":[188],"description":[189],"based":[191],"ontology":[195],"(GO)":[196],"standard.":[197],"At":[198],"stage,":[200],"our":[201],"approach":[202],"producing":[206],"promising":[207],"results":[208,231],"all":[210],"surrounding":[211],"restrictions,":[212],"one":[213],"which":[215],"lack":[218],"similar":[220],"work":[221],"literature.":[224],"For":[225],"demonstration":[226],"purposes,":[227],"report":[229],"molting":[234],"regulation":[235],"pathway":[236],"Drosophila":[238],"melanogaster":[239],"(fruit":[240],"fly).":[241]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
