{"id":"https://openalex.org/W1994885608","doi":"https://doi.org/10.1142/s0219525911003050","title":"NETWORK AUTOMATA: COUPLING STRUCTURE AND FUNCTION IN DYNAMIC NETWORKS","display_name":"NETWORK AUTOMATA: COUPLING STRUCTURE AND FUNCTION IN DYNAMIC NETWORKS","publication_year":2011,"publication_date":"2011-06-01","ids":{"openalex":"https://openalex.org/W1994885608","doi":"https://doi.org/10.1142/s0219525911003050","mag":"1994885608"},"language":"en","primary_location":{"id":"doi:10.1142/s0219525911003050","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219525911003050","pdf_url":null,"source":{"id":"https://openalex.org/S107361000","display_name":"Advances in Complex Systems","issn_l":"0219-5259","issn":["0219-5259","1793-6802","1793-9615","1793-9623"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Complex Systems","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/physics/0701307","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078462606","display_name":"D. M. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"DAVID M. D. SMITH","raw_affiliation_strings":["Centre for Mathematical Biology, Oxford University, Oxford OX1 3LB, UK","Oxford Centre for Integrative Systems Biology, Department of Biochemistry, Oxford University, South Parks Road, Oxford, OX1 3QU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Mathematical Biology, Oxford University, Oxford OX1 3LB, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford Centre for Integrative Systems Biology, Department of Biochemistry, Oxford University, South Parks Road, Oxford, OX1 3QU, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110644699","display_name":"Jukka-Pekka Onnela","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"JUKKA-PEKKA ONNELA","raw_affiliation_strings":["CABDyN Complexity Centre, Oxford University, Oxford, OX1 1HP, UK","Department of Biomedical Engineering and Computational Science, Helsinki University of Technology, P.O. Box 9203, FIN-02015 HUT, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CABDyN Complexity Centre, Oxford University, Oxford, OX1 1HP, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biomedical Engineering and Computational Science, Helsinki University of Technology, P.O. Box 9203, FIN-02015 HUT, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060895665","display_name":"Chiu Fan Lee","orcid":"https://orcid.org/0000-0003-4363-9050"},"institutions":[{"id":"https://openalex.org/I4210111875","display_name":"Max Planck Institute for the Physics of Complex Systems","ror":"https://ror.org/01bf9rw71","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210111875"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"CHIU FAN LEE","raw_affiliation_strings":["Max Planck Institute for the Physics of Complex Systems, Noethnitzer Str. 38, 01187 Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for the Physics of Complex Systems, Noethnitzer Str. 38, 01187 Dresden, Germany","institution_ids":["https://openalex.org/I4210111875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026839832","display_name":"Mark D. Fricker","orcid":"https://orcid.org/0000-0002-8942-6897"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"MARK D. FRICKER","raw_affiliation_strings":["Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK","Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK;","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031168379","display_name":"Neil F. Johnson","orcid":"https://orcid.org/0000-0002-3224-3213"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"NEIL F. JOHNSON","raw_affiliation_strings":["Physics Department, University of Miami, Coral Gables, Florida FL 33124, USA","Physics Department, University of Miami - Coral Gables, Florida FL 33124, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physics Department, University of Miami, Coral Gables, Florida FL 33124, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Physics Department, University of Miami - Coral Gables, Florida FL 33124, USA","institution_ids":["https://openalex.org/I145608581"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9224,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.72844844,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"03","first_page":"317","last_page":"339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9652000069618225,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7269635200500488},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.663751482963562},{"id":"https://openalex.org/keywords/automaton","display_name":"Automaton","score":0.5973783135414124},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.5613068342208862},{"id":"https://openalex.org/keywords/cellular-automaton","display_name":"Cellular automaton","score":0.5324339270591736},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5299217104911804},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5220727324485779},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5197474956512451},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.4992399215698242},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.49513259530067444},{"id":"https://openalex.org/keywords/network-formation","display_name":"Network formation","score":0.479541540145874},{"id":"https://openalex.org/keywords/coupling","display_name":"Coupling (piping)","score":0.4652256667613983},{"id":"https://openalex.org/keywords/dynamic-network-analysis","display_name":"Dynamic network analysis","score":0.44704440236091614},{"id":"https://openalex.org/keywords/network-structure","display_name":"Network structure","score":0.43599602580070496},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.41555488109588623},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4129774570465088},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24081942439079285},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19941622018814087}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7269635200500488},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.663751482963562},{"id":"https://openalex.org/C112505250","wikidata":"https://www.wikidata.org/wiki/Q787116","display_name":"Automaton","level":2,"score":0.5973783135414124},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.5613068342208862},{"id":"https://openalex.org/C35527583","wikidata":"https://www.wikidata.org/wiki/Q189156","display_name":"Cellular automaton","level":2,"score":0.5324339270591736},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5299217104911804},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5220727324485779},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5197474956512451},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.4992399215698242},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.49513259530067444},{"id":"https://openalex.org/C68416499","wikidata":"https://www.wikidata.org/wiki/Q7001033","display_name":"Network formation","level":2,"score":0.479541540145874},{"id":"https://openalex.org/C131584629","wikidata":"https://www.wikidata.org/wiki/Q4308705","display_name":"Coupling (piping)","level":2,"score":0.4652256667613983},{"id":"https://openalex.org/C13540734","wikidata":"https://www.wikidata.org/wiki/Q5318996","display_name":"Dynamic network analysis","level":2,"score":0.44704440236091614},{"id":"https://openalex.org/C2988224531","wikidata":"https://www.wikidata.org/wiki/Q20830730","display_name":"Network structure","level":2,"score":0.43599602580070496},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.41555488109588623},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4129774570465088},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24081942439079285},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19941622018814087},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1142/s0219525911003050","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219525911003050","pdf_url":null,"source":{"id":"https://openalex.org/S107361000","display_name":"Advances in Complex Systems","issn_l":"0219-5259","issn":["0219-5259","1793-6802","1793-9615","1793-9623"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Complex Systems","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:physics/0701307","is_oa":true,"landing_page_url":"http://arxiv.org/abs/physics/0701307","pdf_url":"https://arxiv.org/pdf/physics/0701307","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:RePEc:wsi:acsxxx:v:14:y:2011:i:03:n:s0219525911003050","is_oa":false,"landing_page_url":"http://www.worldscientific.com/doi/abs/10.1142/S0219525911003050","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:physics/0701307","is_oa":true,"landing_page_url":"http://arxiv.org/abs/physics/0701307","pdf_url":"https://arxiv.org/pdf/physics/0701307","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W91093124","https://openalex.org/W1549427476","https://openalex.org/W1581200054","https://openalex.org/W1675665627","https://openalex.org/W1970649274","https://openalex.org/W1992178704","https://openalex.org/W2001434162","https://openalex.org/W2008620264","https://openalex.org/W2009701374","https://openalex.org/W2034286445","https://openalex.org/W2042657449","https://openalex.org/W2055779575","https://openalex.org/W2058848660","https://openalex.org/W2060977279","https://openalex.org/W2064932793","https://openalex.org/W2065896106","https://openalex.org/W2084019104","https://openalex.org/W2090043718","https://openalex.org/W2092934112","https://openalex.org/W2108704847","https://openalex.org/W2109458949","https://openalex.org/W2112090702","https://openalex.org/W2119706602","https://openalex.org/W2124637492","https://openalex.org/W2136931666","https://openalex.org/W2143891192","https://openalex.org/W2148606196","https://openalex.org/W2169545495","https://openalex.org/W2951665412","https://openalex.org/W4312512934"],"related_works":["https://openalex.org/W64189218","https://openalex.org/W2064892860","https://openalex.org/W2183075656","https://openalex.org/W3077696333","https://openalex.org/W3166501995","https://openalex.org/W4205807993","https://openalex.org/W2796517744","https://openalex.org/W2349163476","https://openalex.org/W2099584950","https://openalex.org/W2912358688"],"abstract_inverted_index":{"We":[0,45],"introduce":[1,47],"Network":[2,43,49],"Automata,":[3],"a":[4,12,23,73,96,136],"framework":[5,98,116],"which":[6,26,51,59,103],"couples":[7],"the":[8,31,60,79,112,123,132],"topological":[9],"evolution":[10],"of":[11,33,91,122,138,143],"network":[13,40,80,104],"to":[14,30,64],"its":[15,19,85],"structure.":[16],"To":[17,130],"demonstrate":[18,131],"implementation":[20,121],"we":[21,134],"describe":[22],"simple":[24,139],"model":[25],"exhibits":[27],"behavior":[28],"similar":[29],"\"Game":[32],"Life\"":[34],"before":[35],"recasting":[36],"some":[37,65],"simple,":[38],"well-known":[39],"models":[41,142],"as":[42],"Automata.":[44],"then":[46],"Functional":[48],"Automata":[50],"are":[52,109],"useful":[53],"for":[54,99,118],"dealing":[55],"with":[56],"networks":[57],"in":[58,102,127],"topology":[61],"evolves":[62],"according":[63],"specified":[66],"microscopic":[67,124],"rules":[68,125],"and,":[69],"simultaneously,":[70],"there":[71],"is":[72,88,95],"dynamic":[74],"process":[75],"taking":[76],"place":[77],"on":[78,84],"that":[81],"both":[82],"depends":[83],"structure":[86],"but":[87],"also":[89],"capable":[90],"modifying":[92],"it.":[93],"It":[94],"generic":[97],"modeling":[100],"systems":[101],"structure,":[105],"dynamics,":[106],"and":[107],"function":[108],"interrelated.":[110],"At":[111],"practical":[113],"level,":[114],"this":[115],"allows":[117],"precise,":[119],"unambiguous":[120],"involved":[126],"such":[128],"systems.":[129],"approach,":[133],"develop":[135],"family":[137],"biologically":[140],"inspired":[141],"fungal":[144],"growth.":[145]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2016-06-24T00:00:00"}