{"id":"https://openalex.org/W2048451896","doi":"https://doi.org/10.1142/s021952590200047x","title":"A MODEL OF LARGE-SCALE PROTEOME EVOLUTION","display_name":"A MODEL OF LARGE-SCALE PROTEOME EVOLUTION","publication_year":2002,"publication_date":"2002-03-01","ids":{"openalex":"https://openalex.org/W2048451896","doi":"https://doi.org/10.1142/s021952590200047x","mag":"2048451896"},"language":"en","primary_location":{"id":"doi:10.1142/s021952590200047x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021952590200047x","pdf_url":null,"source":{"id":"https://openalex.org/S107361000","display_name":"Advances in Complex Systems","issn_l":"0219-5259","issn":["0219-5259","1793-6802","1793-9615","1793-9623"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Complex Systems","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/cond-mat/0207311","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046878011","display_name":"Ricard V. Sol\u00e9","orcid":"https://orcid.org/0000-0001-6974-1008"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I4210129022","display_name":"Centro de Astrobiolog\u00eda","ror":"https://ror.org/038szmr31","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210117279","https://openalex.org/I4210129022"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":true,"raw_author_name":"RICARD V. SOL\u00c9","raw_affiliation_strings":["ICREA-Complex Systems Research Group, FEN, Universitat Polit\u00e8cnica de Catalunya, Campus Nord B4,     08034 Barcelona, Spain","NASA-associated Astrobiology Institute,  INTA/CSIC, Carr. del Ajalvir Km4, Madrid, Spain","Santa Fe Institute, 1399 Hyde Park Road,  New Mexico 87501, USA","ICREA-Complex Systems Research Group, FEN, Universitat Polit\u00e8cnica de Catalunya, Campus Nord B4, 08034 Barcelona, Spain","Santa Fe Institute, 1399 Hyde Park Road, New Mexico 87501, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICREA-Complex Systems Research Group, FEN, Universitat Polit\u00e8cnica de Catalunya, Campus Nord B4,     08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I11932220"]},{"raw_affiliation_string":"NASA-associated Astrobiology Institute,  INTA/CSIC, Carr. del Ajalvir Km4, Madrid, Spain","institution_ids":["https://openalex.org/I4210129022"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road,  New Mexico 87501, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"ICREA-Complex Systems Research Group, FEN, Universitat Polit\u00e8cnica de Catalunya, Campus Nord B4, 08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I11932220"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road, New Mexico 87501, USA","institution_ids":["https://openalex.org/I1308548392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016146759","display_name":"Romualdo Pastor\u2010Satorras","orcid":"https://orcid.org/0000-0002-4051-6007"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"ROMUALDO PASTOR-SATORRAS","raw_affiliation_strings":["ICREA-Complex Systems Research Group, FEN, Universitat Polit\u00e8cnica de Catalunya, Campus Nord B4,     08034 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICREA-Complex Systems Research Group, FEN, Universitat Polit\u00e8cnica de Catalunya, Campus Nord B4,     08034 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I11932220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101479585","display_name":"Eric Smith","orcid":"https://orcid.org/0000-0003-0013-3447"},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"ERIC SMITH","raw_affiliation_strings":["Santa Fe Institute, 1399 Hyde Park Road,  New Mexico 87501, USA","Santa Fe Institute, 1399 Hyde Park Road, New Mexico 87501, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road,  New Mexico 87501, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road, New Mexico 87501, USA","institution_ids":["https://openalex.org/I1308548392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047959968","display_name":"Thomas B. Kepler","orcid":"https://orcid.org/0000-0002-1383-6865"},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"THOMAS B. KEPLER","raw_affiliation_strings":["Santa Fe Institute, 1399 Hyde Park Road,  New Mexico 87501, USA","Santa Fe Institute, 1399 Hyde Park Road, New Mexico 87501, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road,  New Mexico 87501, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road, New Mexico 87501, USA","institution_ids":["https://openalex.org/I1308548392"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046878011"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I1308548392","https://openalex.org/I4210129022","https://openalex.org/I9617848"],"apc_list":null,"apc_paid":null,"fwci":7.4759,"has_fulltext":true,"cited_by_count":338,"citation_normalized_percentile":{"value":0.98116568,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"05","issue":"01","first_page":"43","last_page":"54"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.8979132175445557},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6544647812843323},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5721789002418518},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5296202301979065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5292971134185791},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.5081267356872559},{"id":"https://openalex.org/keywords/diversification","display_name":"Diversification (marketing strategy)","score":0.43968555331230164},{"id":"https://openalex.org/keywords/genome-evolution","display_name":"Genome evolution","score":0.4376026391983032},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.43024858832359314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4018290042877197},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3106229305267334},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27605634927749634},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2519427537918091}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.8979132175445557},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6544647812843323},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5721789002418518},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5296202301979065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5292971134185791},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.5081267356872559},{"id":"https://openalex.org/C180916674","wikidata":"https://www.wikidata.org/wiki/Q3711935","display_name":"Diversification (marketing strategy)","level":2,"score":0.43968555331230164},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.4376026391983032},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.43024858832359314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4018290042877197},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3106229305267334},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27605634927749634},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2519427537918091},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1142/s021952590200047x","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s021952590200047x","pdf_url":null,"source":{"id":"https://openalex.org/S107361000","display_name":"Advances in Complex Systems","issn_l":"0219-5259","issn":["0219-5259","1793-6802","1793-9615","1793-9623"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Complex Systems","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:cond-mat/0207311","is_oa":true,"landing_page_url":"http://arxiv.org/abs/cond-mat/0207311","pdf_url":"https://arxiv.org/pdf/cond-mat/0207311","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:dnet:upcommonspor::d56b1909111d6c016e51bbbd752ae246","is_oa":true,"landing_page_url":"https://arxiv.org/abs/cond-mat/0207311","pdf_url":"https://upcommons.upc.edu/bitstream/2117/126056/1/0207311.pdf","source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/submittedVersion"},{"id":"pmh:oai:RePEc:wsi:acsxxx:v:05:y:2002:i:01:n:s021952590200047x","is_oa":false,"landing_page_url":"http://www.worldscientific.com/doi/abs/10.1142/S021952590200047X","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:cond-mat/0207311","is_oa":true,"landing_page_url":"http://arxiv.org/abs/cond-mat/0207311","pdf_url":"https://arxiv.org/pdf/cond-mat/0207311","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G171304344","display_name":null,"funder_award_id":"PB97-0693","funder_id":"https://openalex.org/F4320312777","funder_display_name":"Santa Fe Institute"}],"funders":[{"id":"https://openalex.org/F4320312777","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35"},{"id":"https://openalex.org/F4320323737","display_name":"Ministerio de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1524662923","https://openalex.org/W1569275112","https://openalex.org/W1618411327","https://openalex.org/W1641544182","https://openalex.org/W1644749979","https://openalex.org/W1650797637","https://openalex.org/W1658092509","https://openalex.org/W1971224531","https://openalex.org/W1974906719","https://openalex.org/W1983202741","https://openalex.org/W2002396510","https://openalex.org/W2006062026","https://openalex.org/W2008620264","https://openalex.org/W2010242062","https://openalex.org/W2036496916","https://openalex.org/W2038195874","https://openalex.org/W2040941311","https://openalex.org/W2044856354","https://openalex.org/W2050715692","https://openalex.org/W2063539292","https://openalex.org/W2065769502","https://openalex.org/W2079818352","https://openalex.org/W2080115238","https://openalex.org/W2080540350","https://openalex.org/W2102131597","https://openalex.org/W2104085672","https://openalex.org/W2105291362","https://openalex.org/W2110328981","https://openalex.org/W2110919848","https://openalex.org/W2112090702","https://openalex.org/W2113985822","https://openalex.org/W2121477676","https://openalex.org/W2127230663","https://openalex.org/W2130790725","https://openalex.org/W2135123683","https://openalex.org/W2137786672","https://openalex.org/W2144885342","https://openalex.org/W2149630164","https://openalex.org/W2155436344","https://openalex.org/W2164727176","https://openalex.org/W2166558964","https://openalex.org/W2167680767","https://openalex.org/W2168846334","https://openalex.org/W2168909179","https://openalex.org/W2170494099","https://openalex.org/W2170704198","https://openalex.org/W2905110430","https://openalex.org/W2921811239","https://openalex.org/W3103071483","https://openalex.org/W3103786587","https://openalex.org/W4246925013"],"related_works":["https://openalex.org/W3092794487","https://openalex.org/W2094752534","https://openalex.org/W1982829397","https://openalex.org/W2106414650","https://openalex.org/W2347437365","https://openalex.org/W2025055488","https://openalex.org/W1999412725","https://openalex.org/W2124137418","https://openalex.org/W2575115220","https://openalex.org/W2580329791"],"abstract_inverted_index":{"The":[0,18],"next":[1],"step":[2],"in":[3],"the":[4,7,11,21,56,80,86,89,96],"understanding":[5],"of":[6,13,24,40,58,70,79,88,105,123],"genome":[8],"organization,":[9],"after":[10],"determination":[12],"complete":[14],"sequences,":[15],"involves":[16],"proteomics.":[17],"proteome":[19,71,113],"includes":[20],"whole":[22],"set":[23],"protein-protein":[25],"interactions,":[26],"and":[27,50,61,108],"two":[28],"recent":[29],"independent":[30],"studies":[31],"have":[32],"shown":[33],"that":[34,73,95,110],"its":[35,62,124],"topology":[36,60],"displays":[37],"a":[38,67,103,116],"number":[39],"surprising":[41],"features":[42],"shared":[43],"by":[44,102],"other":[45],"complex":[46],"networks,":[47],"both":[48],"natural":[49],"artificial.":[51],"In":[52],"order":[53],"to":[54,76],"understand":[55],"origins":[57],"this":[59],"evolutionary":[63],"implications,":[64],"we":[65],"present":[66],"simple":[68],"model":[69],"evolution":[72],"is":[74],"able":[75],"reproduce":[77],"many":[78],"observed":[81,97],"statistical":[82],"regularities":[83],"reported":[84],"from":[85],"analysis":[87],"yeast":[90],"proteome.":[91],"Our":[92],"results":[93],"suggest":[94],"patterns":[98],"can":[99],"be":[100],"explained":[101],"process":[104],"gene":[106],"duplication":[107],"diversification":[109],"would":[111],"evolve":[112],"networks":[114],"under":[115],"selection":[117],"pressure,":[118],"favoring":[119],"robustness":[120],"against":[121],"failure":[122],"individual":[125],"components.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":38},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":21}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
