{"id":"https://openalex.org/W2023494101","doi":"https://doi.org/10.1142/s0218843002000595","title":"BioMAS: A MULTI-AGENT SYSTEM FOR GENOMIC ANNOTATION","display_name":"BioMAS: A MULTI-AGENT SYSTEM FOR GENOMIC ANNOTATION","publication_year":2002,"publication_date":"2002-09-01","ids":{"openalex":"https://openalex.org/W2023494101","doi":"https://doi.org/10.1142/s0218843002000595","mag":"2023494101"},"language":"en","primary_location":{"id":"doi:10.1142/s0218843002000595","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218843002000595","pdf_url":null,"source":{"id":"https://openalex.org/S17147961","display_name":"International Journal of Cooperative Information Systems","issn_l":"0218-8430","issn":["0218-8430","1793-6365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Cooperative Information Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053733472","display_name":"Keith Decker","orcid":"https://orcid.org/0000-0003-2707-5769"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"KEITH DECKER","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069434741","display_name":"Salim Khan","orcid":"https://orcid.org/0000-0003-1582-0266"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"SALIM KHAN","raw_affiliation_strings":["Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004246605","display_name":"Carl J. Schmidt","orcid":"https://orcid.org/0000-0002-8386-4781"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"CARL SCHMIDT","raw_affiliation_strings":["Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085513080","display_name":"Gang Situ","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"GANG SITU","raw_affiliation_strings":["Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043351951","display_name":"Ravi Makkena","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"RAVI MAKKENA","raw_affiliation_strings":["Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110649706","display_name":"D. J. Michaud","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"DENNIS MICHAUD","raw_affiliation_strings":["Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Science, University of  Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Science, University of Delaware, 77E. Delaware Avenue, Newark DE 19716-2586, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":null,"apc_paid":null,"fwci":5.555,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.95805288,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"03n04","first_page":"265","last_page":"292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7956255674362183},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6095870137214661},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.5752418041229248},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.49665194749832153},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4489275813102722},{"id":"https://openalex.org/keywords/genomic-information","display_name":"Genomic information","score":0.44624489545822144},{"id":"https://openalex.org/keywords/genomic-sequencing","display_name":"Genomic sequencing","score":0.4238876700401306},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3323569595813751},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.31320762634277344},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16453859210014343},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10627391934394836},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08441531658172607}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7956255674362183},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6095870137214661},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.5752418041229248},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.49665194749832153},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4489275813102722},{"id":"https://openalex.org/C3020077223","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomic information","level":4,"score":0.44624489545822144},{"id":"https://openalex.org/C2994067223","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"Genomic sequencing","level":4,"score":0.4238876700401306},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3323569595813751},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.31320762634277344},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16453859210014343},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10627391934394836},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08441531658172607},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1142/s0218843002000595","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218843002000595","pdf_url":null,"source":{"id":"https://openalex.org/S17147961","display_name":"International Journal of Cooperative Information Systems","issn_l":"0218-8430","issn":["0218-8430","1793-6365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Cooperative Information Systems","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.7.2928","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.7.2928","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.eecis.udel.edu/~decker/pubs/biomas-ijcis02.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W26772505","https://openalex.org/W73176480","https://openalex.org/W93939387","https://openalex.org/W125070426","https://openalex.org/W379208378","https://openalex.org/W1518211761","https://openalex.org/W1531361018","https://openalex.org/W1539016358","https://openalex.org/W1566946601","https://openalex.org/W1573304844","https://openalex.org/W1574410118","https://openalex.org/W1814069098","https://openalex.org/W1933590679","https://openalex.org/W1961615789","https://openalex.org/W1969731555","https://openalex.org/W1978227866","https://openalex.org/W2017583960","https://openalex.org/W2073555374","https://openalex.org/W2103683705","https://openalex.org/W2111832462","https://openalex.org/W2121789803","https://openalex.org/W2124344619","https://openalex.org/W2130766754","https://openalex.org/W2133453031","https://openalex.org/W2146888641","https://openalex.org/W2150926065","https://openalex.org/W2160948978","https://openalex.org/W2165011536","https://openalex.org/W2172549414","https://openalex.org/W2428236244","https://openalex.org/W2473419855","https://openalex.org/W4247964656","https://openalex.org/W4253319122","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2268475462","https://openalex.org/W2106894360","https://openalex.org/W3048513249","https://openalex.org/W2749539820","https://openalex.org/W2103925019","https://openalex.org/W2899667970","https://openalex.org/W2732979256","https://openalex.org/W1986052395","https://openalex.org/W3150115183","https://openalex.org/W2099604995"],"abstract_inverted_index":{"The":[0],"explosive":[1],"growth":[2],"in":[3],"genomic":[4,106],"(and":[5],"soon,":[6],"expression":[7],"and":[8,45,71,97],"proteomic)":[9],"data,":[10],"exemplified":[11],"by":[12],"the":[13,22,43,60],"Human":[14],"Genome":[15],"Project,":[16],"is":[17,86],"a":[18,64,87],"fertile":[19],"domain":[20],"for":[21,79,90,105],"application":[23,89],"of":[24,31,62],"multi-agent":[25,51,65],"information":[26,76,91],"gathering":[27,77],"technologies.":[28],"Furthermore,":[29],"hundreds":[30],"smaller-profile,":[32],"yet":[33],"still":[34],"economically":[35],"important":[36],"organisms":[37],"are":[38],"being":[39],"studied":[40],"that":[41,50,100],"require":[42],"efficient":[44],"inexpensive":[46],"automated":[47],"analysis":[48,103],"tools":[49],"approaches":[52],"can":[53],"provide.":[54],"In":[55],"this":[56],"paper,":[57],"we":[58],"discuss":[59],"use":[61],"DECAF,":[63],"system":[66],"toolkit":[67],"based":[68],"on":[69],"RETSINA":[70],"TAEMS,":[72],"to":[73],"build":[74],"reusable":[75],"systems":[78],"bioinformatics.":[80],"We":[81],"will":[82],"cover":[83],"why":[84],"bioinformatics":[85],"classic":[88],"gathering,":[92],"how":[93],"DECAF":[94],"supports":[95],"it,":[96],"several":[98],"extensions":[99],"support":[101],"new":[102],"paths":[104],"information.":[107]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
