{"id":"https://openalex.org/W2168807641","doi":"https://doi.org/10.1142/s0218213015400023","title":"ncRNAclass: A Web Platform for Non-Coding RNA Feature Calculation and MicroRNAs and Targets Prediction","display_name":"ncRNAclass: A Web Platform for Non-Coding RNA Feature Calculation and MicroRNAs and Targets Prediction","publication_year":2015,"publication_date":"2015-02-01","ids":{"openalex":"https://openalex.org/W2168807641","doi":"https://doi.org/10.1142/s0218213015400023","mag":"2168807641"},"language":"en","primary_location":{"id":"doi:10.1142/s0218213015400023","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218213015400023","pdf_url":null,"source":{"id":"https://openalex.org/S178780388","display_name":"International Journal of Artificial Intelligence Tools","issn_l":"0218-2130","issn":["0218-2130","1793-6349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Artificial Intelligence Tools","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023758361","display_name":"Konstantina Karathanou","orcid":"https://orcid.org/0000-0003-3401-6011"},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Konstantina Karathanou","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101999780","display_name":"Konstantinos Theofilatos","orcid":"https://orcid.org/0000-0001-6799-0553"},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Konstantinos Theofilatos","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064001499","display_name":"Dimitrios Kleftogiannis","orcid":"https://orcid.org/0000-0003-1086-821X"},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Dimitrios Kleftogiannis","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072719709","display_name":"Christos Alexakos","orcid":"https://orcid.org/0000-0002-8932-6781"},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Christos Alexakos","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113781379","display_name":"Spiros Likothanassis","orcid":null},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Spiros Likothanassis","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111647071","display_name":"Athanasios Tsakalidis","orcid":null},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Athanasios Tsakalidis","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021368521","display_name":"Seferina Mavroudi","orcid":"https://orcid.org/0000-0003-0612-1009"},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Seferina Mavroudi","raw_affiliation_strings":["Department of Computer Engineering and Informatics, University of Patras, Greece","Department of Social Work, School of Sciences of Health and Care Technological Educational Institute of Patras, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Informatics, University of Patras, Greece","institution_ids":["https://openalex.org/I174878644"]},{"raw_affiliation_string":"Department of Social Work, School of Sciences of Health and Care Technological Educational Institute of Patras, Greece","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3539,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.62287105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":"01","first_page":"1540002","last_page":"1540002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7844111323356628},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5808485150337219},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5326682329177856},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4756562113761902},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.42534321546554565},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.41745123267173767},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.41517114639282227},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40880170464515686},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3790970742702484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37780269980430603},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33204808831214905},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1844024658203125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1581164300441742},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12729674577713013}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7844111323356628},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5808485150337219},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5326682329177856},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4756562113761902},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.42534321546554565},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.41745123267173767},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.41517114639282227},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40880170464515686},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3790970742702484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37780269980430603},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33204808831214905},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1844024658203125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1581164300441742},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12729674577713013},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0218213015400023","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218213015400023","pdf_url":null,"source":{"id":"https://openalex.org/S178780388","display_name":"International Journal of Artificial Intelligence Tools","issn_l":"0218-2130","issn":["0218-2130","1793-6349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Artificial Intelligence Tools","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321038","display_name":"Fonds National de la Recherche Luxembourg","ror":"https://ror.org/039z13y21"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1659842140","https://openalex.org/W1890374229","https://openalex.org/W1920564293","https://openalex.org/W1975981804","https://openalex.org/W2020187738","https://openalex.org/W2021274070","https://openalex.org/W2028994878","https://openalex.org/W2048498948","https://openalex.org/W2050869737","https://openalex.org/W2053490054","https://openalex.org/W2054234144","https://openalex.org/W2054308913","https://openalex.org/W2055309264","https://openalex.org/W2067104146","https://openalex.org/W2070777085","https://openalex.org/W2077038036","https://openalex.org/W2083381199","https://openalex.org/W2089142809","https://openalex.org/W2093213907","https://openalex.org/W2098044747","https://openalex.org/W2103250001","https://openalex.org/W2103760949","https://openalex.org/W2106423003","https://openalex.org/W2113466460","https://openalex.org/W2119820853","https://openalex.org/W2120456037","https://openalex.org/W2124050695","https://openalex.org/W2128356721","https://openalex.org/W2130388134","https://openalex.org/W2130674065","https://openalex.org/W2135314242","https://openalex.org/W2140751493","https://openalex.org/W2150770935","https://openalex.org/W2157039533","https://openalex.org/W2400250419"],"related_works":["https://openalex.org/W4287985651","https://openalex.org/W2161283857","https://openalex.org/W24788365","https://openalex.org/W2419531688","https://openalex.org/W3160767797","https://openalex.org/W2557582719","https://openalex.org/W29696326","https://openalex.org/W2973742484","https://openalex.org/W2777367386","https://openalex.org/W2042898046"],"abstract_inverted_index":{"According":[0],"to":[1,70],"the":[2,14,26,75,121,130,138,158],"central":[3],"dogma":[4],"of":[5,13,28,77,84,112,115,124,132,141,161],"Biology":[6],"it":[7,128],"was":[8,17],"commonly":[9],"accepted":[10],"that":[11,25,49,107,117,134,181,205],"most":[12],"genetic":[15],"information":[16,136,208],"transacted":[18],"by":[19],"proteins.":[20],"Recent":[21],"experimental":[22],"techniques":[23],"revealed":[24],"majority":[27],"mammalian":[29],"genomes":[30],"and":[31,55,73,87,95,150,163,210],"other":[32],"complex":[33],"organisms":[34],"are":[35,45,50,172],"in":[36,63,187],"fact":[37],"transcribed":[38,52],"into":[39,53],"non-coding":[40,43,85,125],"RNAs.":[41,126],"Typically,":[42],"RNAs":[44,86],"small":[46],"nucleotide":[47],"sequences":[48],"not":[51],"proteins":[54],"have":[56],"a":[57,93,104,113,147,198],"profound":[58],"regulatory":[59],"role.":[60],"Present":[61],"advances":[62],"computational":[64],"biosciences":[65],"linked":[66],"their":[67,88,166],"abnormal":[68],"functionality":[69],"many":[71],"diseases":[72],"re-stated":[74],"principles":[76],"basic":[78],"therapeutic":[79],"strategies.":[80],"The":[81,143,169,192],"effective":[82],"identification":[83],"biological":[89],"role":[90],"emerges":[91],"as":[92],"new":[94],"challenging":[96],"bioinformatics":[97],"problem.":[98],"ncRNAclass":[99],"(":[100],"http://biotools.ceid.upatras.gr/ncrnaclass/":[101],")":[102],"is":[103,194],"web":[105],"platform":[106,193],"allows":[108],"for":[109,157,164],"efficient":[110],"computation":[111],"set":[114],"features":[116,133],"can":[118],"describe":[119],"effectively":[120],"broad":[122],"class":[123,160],"Moreover,":[127],"enables":[129,206],"calculation":[131],"include":[135],"about":[137],"targeting":[139],"behavior":[140],"miRNAs.":[142],"tool":[144],"operates":[145],"under":[146],"user-friendly":[148],"interface":[149],"its":[151],"pilot":[152],"implementation":[153],"incorporates":[154],"prediction":[155,165,170],"models":[156,171],"well-known":[159],"microRNAs":[162],"mRNA":[167],"targets.":[168],"based":[173],"on":[174],"two":[175],"novel":[176],"evolutionary":[177],"Machine":[178],"Learning":[179],"algorithms":[180],"achieve":[182],"very":[183],"high":[184],"classification":[185],"performance":[186],"comparison":[188],"with":[189,197,201],"existing":[190],"methods.":[191],"also":[195],"equipped":[196],"data":[199,211],"warehouse,":[200],"manually":[202],"curated":[203],"sequences,":[204],"fast":[207],"retrieval":[209],"mining":[212],"utilities.":[213]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}