{"id":"https://openalex.org/W2168489973","doi":"https://doi.org/10.1142/s0218213005002302","title":"GENE CLASSIFICATION USING EXPRESSION PROFILES: A FEASIBILITY STUDY","display_name":"GENE CLASSIFICATION USING EXPRESSION PROFILES: A FEASIBILITY STUDY","publication_year":2005,"publication_date":"2005-07-25","ids":{"openalex":"https://openalex.org/W2168489973","doi":"https://doi.org/10.1142/s0218213005002302","mag":"2168489973"},"language":"en","primary_location":{"id":"doi:10.1142/s0218213005002302","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218213005002302","pdf_url":null,"source":{"id":"https://openalex.org/S178780388","display_name":"International Journal of Artificial Intelligence Tools","issn_l":"0218-2130","issn":["0218-2130","1793-6349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Artificial Intelligence Tools","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110870379","display_name":"Michihiro Kuramochi","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"MICHIHIRO KURAMOCHI","raw_affiliation_strings":["University of Minnesota,  Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital  Technology Center, 4-192 EE/CS Building, 200 Union St SE,  Minneapolis, MN 55455, USA","University of Minnesota, Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital Technology Center, 4-192 EE/CS Building, 200 Union St SE, Minneapolis, MN 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota,  Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital  Technology Center, 4-192 EE/CS Building, 200 Union St SE,  Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota, Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital Technology Center, 4-192 EE/CS Building, 200 Union St SE, Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082384108","display_name":"George Karypis","orcid":"https://orcid.org/0000-0003-2753-1437"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"GEORGE KARYPIS","raw_affiliation_strings":["University of Minnesota,  Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital  Technology Center, 4-192 EE/CS Building, 200 Union St SE,  Minneapolis, MN 55455, USA","University of Minnesota, Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital Technology Center, 4-192 EE/CS Building, 200 Union St SE, Minneapolis, MN 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota,  Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital  Technology Center, 4-192 EE/CS Building, 200 Union St SE,  Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"University of Minnesota, Department of Computer Science &amp; Engineering/Army HPC Research Center/Digital Technology Center, 4-192 EE/CS Building, 200 Union St SE, Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.1376,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.76792844,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"04","first_page":"641","last_page":"660"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.729343056678772},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.637047529220581},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.600904643535614},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5417426824569702},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5239627361297607},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.49390655755996704},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4883377254009247},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4828405976295471},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4574032127857208},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.44920480251312256},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4172835350036621},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3738517165184021},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3655540347099304},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36465275287628174},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22411179542541504},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18470332026481628}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.729343056678772},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.637047529220581},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.600904643535614},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5417426824569702},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5239627361297607},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.49390655755996704},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4883377254009247},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4828405976295471},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4574032127857208},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.44920480251312256},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4172835350036621},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3738517165184021},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3655540347099304},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36465275287628174},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22411179542541504},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18470332026481628},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0218213005002302","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218213005002302","pdf_url":null,"source":{"id":"https://openalex.org/S178780388","display_name":"International Journal of Artificial Intelligence Tools","issn_l":"0218-2130","issn":["0218-2130","1793-6349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Artificial Intelligence Tools","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1541767983","https://openalex.org/W1604938182","https://openalex.org/W1610836425","https://openalex.org/W1670263352","https://openalex.org/W1704669313","https://openalex.org/W1827261456","https://openalex.org/W1984539096","https://openalex.org/W1992108607","https://openalex.org/W2071726659","https://openalex.org/W2102794349","https://openalex.org/W2109363337","https://openalex.org/W2109970232","https://openalex.org/W2119821739","https://openalex.org/W2125055259","https://openalex.org/W2140611547","https://openalex.org/W2148603752","https://openalex.org/W2149706766","https://openalex.org/W2150926065","https://openalex.org/W2156909104","https://openalex.org/W2170962136","https://openalex.org/W4246925013","https://openalex.org/W4248536238","https://openalex.org/W4292881157","https://openalex.org/W4297957988"],"related_works":["https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2356429006","https://openalex.org/W2155595079","https://openalex.org/W2380568150","https://openalex.org/W2385787406","https://openalex.org/W2411510900","https://openalex.org/W2263355832","https://openalex.org/W284518807"],"abstract_inverted_index":{"As":[0],"various":[1,185],"genome":[2,13],"sequencing":[3],"projects":[4],"have":[5],"already":[6],"been":[7],"completed":[8],"or":[9,173],"are":[10,15,206],"near":[11],"completion,":[12],"researchers":[14],"shifting":[16],"their":[17,106],"focus":[18,86],"to":[19,33,72,198],"functional":[20],"genomics.":[21],"Functional":[22],"genomics":[23],"represents":[24],"the":[25,30,35,49,67,77,89,99,112,127,138,150,165,175,184,204],"next":[26],"phase,":[27],"that":[28,136,149,164,178,189,203],"expands":[29],"biological":[31],"investigation":[32],"studying":[34,46],"functionality":[36,50],"of":[37,39,51,69,79,91,101,114,177,212],"genes":[38,52,102,176,205],"a":[40,195,209],"single":[41],"organism":[42],"as":[43,45,119],"well":[44],"and":[47,123,130],"correlating":[48],"across":[53],"many":[54],"different":[55,154],"organisms.":[56],"Recently":[57],"developed":[58],"methods":[59,96],"for":[60,97,134,153],"monitoring":[61],"genome-wide":[62],"mRNA":[63],"expression":[64,107,191],"changes":[65],"hold":[66],"promise":[68],"allowing":[70],"us":[71],"inexpensively":[73],"gain":[74],"insights":[75],"into":[76],"function":[78,100],"unknown":[80],"genes.":[81],"In":[82,158],"this":[83],"paper":[84],"we":[85,162],"on":[87,105,126,171],"evaluating":[88],"feasibility":[90],"using":[92],"supervised":[93],"machine":[94],"learning":[95],"determining":[98],"based":[103],"solely":[104],"profiles.":[108],"We":[109],"experimentally":[110],"evaluate":[111],"performance":[113],"traditional":[115],"classification":[116,135],"algorithms":[117],"such":[118],"support":[120],"vector":[121],"machines":[122],"k-nearest":[124],"neighbors":[125],"yeast":[128],"genome,":[129],"present":[131],"new":[132],"approaches":[133],"improve":[137],"overall":[139],"recall":[140],"with":[141],"moderate":[142],"reductions":[143],"in":[144],"precision.":[145],"Our":[146],"experiments":[147],"show":[148,163],"accuracies":[151],"achieved":[152,166],"classes":[155],"varies":[156],"dramatically.":[157],"analyzing":[159],"these":[160],"results":[161],"accuracy":[167],"is":[168],"highly":[169],"dependent":[170],"whether":[172],"not":[174],"class":[179],"were":[180],"significantly":[181],"active":[182],"during":[183],"experimental":[186,213],"conditions,":[187],"suggesting":[188],"gene":[190],"profiles":[192],"can":[193],"become":[194],"viable":[196],"alternative":[197],"sequence":[199],"similarity":[200],"searches":[201],"provided":[202],"observed":[207],"under":[208],"wide":[210],"range":[211],"conditions.":[214]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
