{"id":"https://openalex.org/W3102000450","doi":"https://doi.org/10.1142/s0218194020500382","title":"Design and Implementation of Phylotastic, a Service Architecture for Evolutionary Biology","display_name":"Design and Implementation of Phylotastic, a Service Architecture for Evolutionary Biology","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W3102000450","doi":"https://doi.org/10.1142/s0218194020500382","mag":"3102000450"},"language":"en","primary_location":{"id":"doi:10.1142/s0218194020500382","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218194020500382","pdf_url":null,"source":{"id":"https://openalex.org/S131442419","display_name":"International Journal of Software Engineering and Knowledge Engineering","issn_l":"0218-1940","issn":["0218-1940","1793-6403"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Software Engineering and Knowledge Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046678380","display_name":"Abu Saleh Md Tayeen","orcid":null},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abu Saleh Md. Tayeen","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000357988","display_name":"Thanh Hai Nguyen","orcid":"https://orcid.org/0000-0001-9996-4720"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thanh Hai Nguyen","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089409625","display_name":"V\u0103n \u0110\u1ee9c Nguy\u1ec5n","orcid":"https://orcid.org/0000-0003-1414-4032"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Van Duc Nguyen","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024528910","display_name":"Enrico Pontelli","orcid":"https://orcid.org/0000-0002-7753-1737"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Enrico Pontelli","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Box 30001, MSC CS, Las Cruces, NM 88003, USA","institution_ids":["https://openalex.org/I10052268"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5024528910"],"corresponding_institution_ids":["https://openalex.org/I10052268"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22324575,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"30","issue":"10","first_page":"1525","last_page":"1550"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperation","display_name":"Interoperation","score":0.8129755258560181},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7373101711273193},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6914792060852051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6239601969718933},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6074066758155823},{"id":"https://openalex.org/keywords/service-oriented-architecture","display_name":"Service-oriented architecture","score":0.5902499556541443},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.5278753638267517},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.49979329109191895},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.46569713950157166},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4643818140029907},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.4552929699420929},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.45240622758865356},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2627859115600586},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.2595088481903076},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.20264127850532532},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0984240472316742}],"concepts":[{"id":"https://openalex.org/C139458680","wikidata":"https://www.wikidata.org/wiki/Q12184942","display_name":"Interoperation","level":3,"score":0.8129755258560181},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7373101711273193},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6914792060852051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6239601969718933},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6074066758155823},{"id":"https://openalex.org/C57041688","wikidata":"https://www.wikidata.org/wiki/Q220644","display_name":"Service-oriented architecture","level":3,"score":0.5902499556541443},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.5278753638267517},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.49979329109191895},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.46569713950157166},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4643818140029907},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.4552929699420929},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.45240622758865356},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2627859115600586},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.2595088481903076},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.20264127850532532},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0984240472316742},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0218194020500382","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218194020500382","pdf_url":null,"source":{"id":"https://openalex.org/S131442419","display_name":"International Journal of Software Engineering and Knowledge Engineering","issn_l":"0218-1940","issn":["0218-1940","1793-6403"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Software Engineering and Knowledge Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W16813012","https://openalex.org/W202046787","https://openalex.org/W1490937614","https://openalex.org/W1497612469","https://openalex.org/W1527654060","https://openalex.org/W1541653499","https://openalex.org/W1645937837","https://openalex.org/W1659289657","https://openalex.org/W1750572126","https://openalex.org/W1973094248","https://openalex.org/W1988226737","https://openalex.org/W1991804333","https://openalex.org/W1996816368","https://openalex.org/W2004389753","https://openalex.org/W2004805762","https://openalex.org/W2012024302","https://openalex.org/W2049772416","https://openalex.org/W2085018315","https://openalex.org/W2100412820","https://openalex.org/W2100827887","https://openalex.org/W2105803236","https://openalex.org/W2119632499","https://openalex.org/W2120375049","https://openalex.org/W2133109597","https://openalex.org/W2139934466","https://openalex.org/W2142319534","https://openalex.org/W2145252923","https://openalex.org/W2163721943","https://openalex.org/W2192583762","https://openalex.org/W2779166857","https://openalex.org/W2951002538","https://openalex.org/W2962948183","https://openalex.org/W3124386704","https://openalex.org/W3199943451","https://openalex.org/W4244384441","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2382177777","https://openalex.org/W1546980300","https://openalex.org/W2013343621","https://openalex.org/W4246898356","https://openalex.org/W100127945","https://openalex.org/W2898818629","https://openalex.org/W2994043954","https://openalex.org/W2783582617","https://openalex.org/W2136457176","https://openalex.org/W2920199510"],"abstract_inverted_index":{"Access":[0],"and":[1,32,60,120,127],"reuse":[2],"of":[3,22,30,34,70,96],"authoritative":[4],"phylogenetic":[5],"knowledge":[6],"have":[7],"been":[8],"a":[9,20,86,93,123],"longstanding":[10],"challenges":[11,49],"in":[12],"the":[13,66,71],"evolutionary":[14,58],"biology":[15],"community":[16],"\u2014":[17,50],"leading":[18],"to":[19,43,47,103,106],"number":[21],"research":[23],"efforts":[24],"(e.g.":[25],"focused":[26],"on":[27,75,122],"interoperation,":[28],"standardization":[29],"formats,":[31],"development":[33],"minimum":[35],"reporting":[36],"requirements).":[37],"The":[38,83,110,132],"Phylotastic":[39,72],"project":[40],"was":[41],"launched":[42],"provide":[44],"an":[45,52,76,101,128],"answer":[46],"such":[48],"as":[51,98,100],"architectural":[53],"concept":[54],"collaboratively":[55],"designed":[56],"by":[57,116],"biologists":[59],"computer":[61],"scientists.":[62],"This":[63],"paper":[64],"describes":[65],"first":[67],"comprehensive":[68],"implementation":[69,84],"architecture,":[73],"based":[74],"open":[77],"platform":[78,133],"for":[79],"Web":[80,90,111,124],"services":[81,91,112,125],"composition.":[82],"provides":[85,134],"portal,":[87],"which":[88],"composes":[89],"along":[92],"fixed":[94],"collection":[95],"workflows,":[97],"well":[99],"interface":[102],"allow":[104],"users":[105],"develop":[107],"novel":[108],"workflows.":[109],"composition":[113],"is":[114],"guided":[115],"automated":[117,138],"planning":[118],"algorithms":[119],"built":[121],"registry":[126],"execution":[129],"monitoring":[130],"engine.":[131],"resilience":[135],"through":[136],"seamless":[137],"recovery":[139],"from":[140],"failed":[141],"services.":[142]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
