{"id":"https://openalex.org/W2011427364","doi":"https://doi.org/10.1142/s0218126615500747","title":"Parallel PPI Prediction Performance Study on HPC Platforms","display_name":"Parallel PPI Prediction Performance Study on HPC Platforms","publication_year":2015,"publication_date":"2015-03-30","ids":{"openalex":"https://openalex.org/W2011427364","doi":"https://doi.org/10.1142/s0218126615500747","mag":"2011427364"},"language":"en","primary_location":{"id":"doi:10.1142/s0218126615500747","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218126615500747","pdf_url":null,"source":{"id":"https://openalex.org/S167602672","display_name":"Journal of Circuits Systems and Computers","issn_l":"0218-1266","issn":["0218-1266","1793-6454"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Circuits, Systems and Computers","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087689650","display_name":"Ali A. El\u2010Moursy","orcid":"https://orcid.org/0000-0002-3660-6544"},"institutions":[{"id":"https://openalex.org/I29891158","display_name":"University of Sharjah","ror":"https://ror.org/00engpz63","country_code":"AE","type":"education","lineage":["https://openalex.org/I29891158"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Ali A. El-Moursy","raw_affiliation_strings":["Electrical and Computer Engineering, University of Sharjah, Sharjah, UAE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of Sharjah, Sharjah, UAE","institution_ids":["https://openalex.org/I29891158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051255829","display_name":"Wael S. Afifi","orcid":"https://orcid.org/0000-0001-9664-5978"},"institutions":[{"id":"https://openalex.org/I4210156128","display_name":"Electronics Research Institute","ror":"https://ror.org/0532wcf75","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210094263","https://openalex.org/I4210156128"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Wael S. Afifi","raw_affiliation_strings":["Computer and Systems, Electronics Research Institute, Cairo, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Systems, Electronics Research Institute, Cairo, Egypt","institution_ids":["https://openalex.org/I4210156128"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052845202","display_name":"Fadi N. Sibai","orcid":"https://orcid.org/0000-0002-9677-8911"},"institutions":[{"id":"https://openalex.org/I4210143841","display_name":"Saudi Aramco (Saudi Arabia)","ror":"https://ror.org/03ypap427","country_code":"SA","type":"company","lineage":["https://openalex.org/I4210143841"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Fadi N. Sibai","raw_affiliation_strings":["Computer Operations Department, Saudi Aramco, Dhahran, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Operations Department, Saudi Aramco, Dhahran, Saudi Arabia","institution_ids":["https://openalex.org/I4210143841"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079091777","display_name":"Salwa M. Nassar","orcid":"https://orcid.org/0000-0002-4145-4987"},"institutions":[{"id":"https://openalex.org/I4210156128","display_name":"Electronics Research Institute","ror":"https://ror.org/0532wcf75","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210094263","https://openalex.org/I4210156128"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Salwa M. Nassar","raw_affiliation_strings":["Computer and Systems, Electronics Research Institute, Cairo, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Systems, Electronics Research Institute, Cairo, Egypt","institution_ids":["https://openalex.org/I4210156128"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4365,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.76354752,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"24","issue":"05","first_page":"1550074","last_page":"1550074"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprocessor-system","display_name":"Uniprocessor system","score":0.9449189901351929},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7928687334060669},{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.7737807631492615},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6926087141036987},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5807600617408752},{"id":"https://openalex.org/keywords/execution-time","display_name":"Execution time","score":0.49694493412971497},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.44962769746780396},{"id":"https://openalex.org/keywords/parallel-algorithm","display_name":"Parallel algorithm","score":0.4114895761013031},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3750803768634796},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.37321972846984863},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.1807458996772766},{"id":"https://openalex.org/keywords/multiprocessing","display_name":"Multiprocessing","score":0.17054465413093567},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10021406412124634}],"concepts":[{"id":"https://openalex.org/C79189994","wikidata":"https://www.wikidata.org/wiki/Q3488021","display_name":"Uniprocessor system","level":3,"score":0.9449189901351929},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7928687334060669},{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.7737807631492615},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6926087141036987},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5807600617408752},{"id":"https://openalex.org/C2989134064","wikidata":"https://www.wikidata.org/wiki/Q288510","display_name":"Execution time","level":2,"score":0.49694493412971497},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.44962769746780396},{"id":"https://openalex.org/C120373497","wikidata":"https://www.wikidata.org/wiki/Q1087987","display_name":"Parallel algorithm","level":2,"score":0.4114895761013031},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3750803768634796},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.37321972846984863},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.1807458996772766},{"id":"https://openalex.org/C4822641","wikidata":"https://www.wikidata.org/wiki/Q846651","display_name":"Multiprocessing","level":2,"score":0.17054465413093567},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10021406412124634}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0218126615500747","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218126615500747","pdf_url":null,"source":{"id":"https://openalex.org/S167602672","display_name":"Journal of Circuits Systems and Computers","issn_l":"0218-1266","issn":["0218-1266","1793-6454"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Circuits, Systems and Computers","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W164384110","https://openalex.org/W938539187","https://openalex.org/W1504716497","https://openalex.org/W1906046253","https://openalex.org/W1999556506","https://openalex.org/W2013164502","https://openalex.org/W2034297532","https://openalex.org/W2045131140","https://openalex.org/W2045340444","https://openalex.org/W2056169617","https://openalex.org/W2080922074","https://openalex.org/W2124661136","https://openalex.org/W2145427519","https://openalex.org/W2161701113","https://openalex.org/W2164328371","https://openalex.org/W2250057853","https://openalex.org/W2398736067","https://openalex.org/W2554813760","https://openalex.org/W4252166161"],"related_works":["https://openalex.org/W3089428898","https://openalex.org/W2119024804","https://openalex.org/W2989726455","https://openalex.org/W2155549897","https://openalex.org/W1583922594","https://openalex.org/W4220998139","https://openalex.org/W2017977262","https://openalex.org/W1993281991","https://openalex.org/W1894280619","https://openalex.org/W2357673252"],"abstract_inverted_index":{"STRIKE":[0,28,50,75],"is":[1,29,59],"an":[2],"algorithm":[3,76,96],"which":[4],"predicts":[5],"protein\u2013protein":[6],"interactions":[7],"(PPIs)":[8],"and":[9,56,71],"determines":[10],"that":[11],"proteins":[12],"interact":[13],"if":[14],"they":[15],"contain":[16],"similar":[17],"substrings":[18],"of":[19,89,93],"amino":[20],"acids.":[21],"Unlike":[22],"other":[23],"methods":[24],"for":[25,77],"PPI":[26,38,47],"prediction,":[27],"able":[30],"to":[31,61,108,117],"achieve":[32],"reasonable":[33],"improvement":[34],"over":[35],"the":[36,86,90],"existing":[37],"prediction":[39,48],"methods.":[40],"Although":[41],"its":[42],"high":[43],"accuracy":[44],"as":[45],"a":[46,52,63,73,83,101,104],"method,":[49],"consumes":[51],"large":[53],"execution":[54,87],"time":[55,88],"hence":[57],"it":[58],"considered":[60],"be":[62],"compute-intensive":[64],"application.":[65],"In":[66],"this":[67,94],"paper,":[68],"we":[69],"develop":[70],"implement":[72],"parallel":[74,91,123],"high-performance":[78],"computing":[79,114],"(HPC)":[80],"systems.":[81],"Using":[82],"large-scale":[84],"cluster,":[85],"implementation":[92],"bioinformatics":[95],"was":[97],"reduced":[98],"from":[99],"about":[100,109,118],"week":[102],"on":[103,112,121],"serial":[105],"uniprocessor":[106],"machine":[107],"16.5":[110],"h":[111,120],"16":[113],"nodes,":[115],"down":[116],"2":[119],"128":[122],"nodes.":[124],"Communication":[125],"overheads":[126],"between":[127],"nodes":[128],"are":[129],"thoroughly":[130],"studied.":[131]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
