{"id":"https://openalex.org/W2078023670","doi":"https://doi.org/10.1142/s0218126607003885","title":"A CONFIGWARE APPROACH FOR HIGH-SPEED PARALLEL ANALYSIS OF GENOMIC DATA","display_name":"A CONFIGWARE APPROACH FOR HIGH-SPEED PARALLEL ANALYSIS OF GENOMIC DATA","publication_year":2007,"publication_date":"2007-08-01","ids":{"openalex":"https://openalex.org/W2078023670","doi":"https://doi.org/10.1142/s0218126607003885","mag":"2078023670"},"language":"en","primary_location":{"id":"doi:10.1142/s0218126607003885","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218126607003885","pdf_url":null,"source":{"id":"https://openalex.org/S167602672","display_name":"Journal of Circuits Systems and Computers","issn_l":"0218-1266","issn":["0218-1266","1793-6454"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Circuits, Systems and Computers","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019757557","display_name":"Heitor Silv\u00e9rio Lopes","orcid":"https://orcid.org/0000-0003-3984-1432"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"HEITOR S. LOPES","raw_affiliation_strings":["Bioinformatics Laboratory/CPGEI, Federal University of Technology \u2013 Paran\u00e1, Av. 7 de setembro 3165, 80230-901 Curitiba (PR), Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory/CPGEI, Federal University of Technology \u2013 Paran\u00e1, Av. 7 de setembro 3165, 80230-901 Curitiba (PR), Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018546513","display_name":"Carlos R. Erig Lima","orcid":"https://orcid.org/0000-0002-4026-4444"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"CARLOS R. ERIG LIMA","raw_affiliation_strings":["Bioinformatics Laboratory/CPGEI, Federal University of Technology \u2013 Paran\u00e1, Av. 7 de setembro 3165, 80230-901 Curitiba (PR), Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory/CPGEI, Federal University of Technology \u2013 Paran\u00e1, Av. 7 de setembro 3165, 80230-901 Curitiba (PR), Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083384404","display_name":"NORTON J. MURATA","orcid":null},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"NORTON J. MURATA","raw_affiliation_strings":["Bioinformatics Laboratory/CPGEI, Federal University of Technology \u2013 Paran\u00e1, Av. 7 de setembro 3165, 80230-901 Curitiba (PR), Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory/CPGEI, Federal University of Technology \u2013 Paran\u00e1, Av. 7 de setembro 3165, 80230-901 Curitiba (PR), Brazil","institution_ids":["https://openalex.org/I1283613182"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019757557"],"corresponding_institution_ids":["https://openalex.org/I1283613182"],"apc_list":null,"apc_paid":null,"fwci":0.2618,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.57992821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"04","first_page":"527","last_page":"540"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7078255414962769},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6463320255279541},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6045872569084167},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5830148458480835},{"id":"https://openalex.org/keywords/parallelism","display_name":"Parallelism (grammar)","score":0.5771853923797607},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.5361497402191162},{"id":"https://openalex.org/keywords/minification","display_name":"Minification","score":0.4698556661605835},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4439391791820526},{"id":"https://openalex.org/keywords/circuit-minimization-for-boolean-functions","display_name":"Circuit minimization for Boolean functions","score":0.44101884961128235},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4058646857738495},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.3665357232093811},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35754913091659546},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.33176809549331665},{"id":"https://openalex.org/keywords/boolean-expression","display_name":"Boolean expression","score":0.18034011125564575},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16608187556266785}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7078255414962769},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6463320255279541},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6045872569084167},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5830148458480835},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.5771853923797607},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.5361497402191162},{"id":"https://openalex.org/C147764199","wikidata":"https://www.wikidata.org/wiki/Q6865248","display_name":"Minification","level":2,"score":0.4698556661605835},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4439391791820526},{"id":"https://openalex.org/C94992772","wikidata":"https://www.wikidata.org/wiki/Q6667469","display_name":"Circuit minimization for Boolean functions","level":4,"score":0.44101884961128235},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4058646857738495},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.3665357232093811},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35754913091659546},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.33176809549331665},{"id":"https://openalex.org/C158465420","wikidata":"https://www.wikidata.org/wiki/Q1979515","display_name":"Boolean expression","level":3,"score":0.18034011125564575},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16608187556266785},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0218126607003885","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0218126607003885","pdf_url":null,"source":{"id":"https://openalex.org/S167602672","display_name":"Journal of Circuits Systems and Computers","issn_l":"0218-1266","issn":["0218-1266","1793-6454"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Circuits, Systems and Computers","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1601021719","https://openalex.org/W1997418937","https://openalex.org/W2017442383","https://openalex.org/W2068041061","https://openalex.org/W2125055259","https://openalex.org/W2166760518","https://openalex.org/W2168652696","https://openalex.org/W2466512847","https://openalex.org/W4212774754","https://openalex.org/W4244818997","https://openalex.org/W4253055460","https://openalex.org/W4292881157"],"related_works":["https://openalex.org/W2156419323","https://openalex.org/W1976822807","https://openalex.org/W1501085929","https://openalex.org/W2724189404","https://openalex.org/W2504025942","https://openalex.org/W2021985366","https://openalex.org/W2002238962","https://openalex.org/W4211064314","https://openalex.org/W2127849157","https://openalex.org/W2031906996"],"abstract_inverted_index":{"Many":[0],"problems":[1],"in":[2,34,46,57,88,100],"bioinformatics":[3],"represent":[4],"great":[5],"computational":[6],"challenges":[7],"due":[8],"to":[9,16,79,117],"the":[10,53],"huge":[11],"amount":[12],"of":[13,27,50,67,104],"biological":[14],"data":[15,120],"be":[17],"analyzed.":[18],"Reconfigurable":[19],"systems":[20],"can":[21],"offer":[22],"custom-computing":[23],"machines,":[24],"with":[25,94,122],"orders":[26],"magnitude":[28],"faster":[29],"than":[30],"regular":[31],"software,":[32],"running":[33],"general-purpose":[35],"processors.":[36],"We":[37],"present":[38],"a":[39,43,65,80,95,101],"methodology":[40],"for":[41],"using":[42,64],"configware":[44],"system":[45],"an":[47],"interesting":[48],"problem":[49],"molecular":[51],"biology:":[52],"splice":[54],"junction":[55],"detection":[56],"eukaryote":[58],"genes.":[59],"Decision":[60],"trees":[61],"were":[62,71],"developed":[63],"benchmark":[66],"DNA":[68],"sequences.":[69],"They":[70],"converted":[72],"into":[73],"logical":[74],"equations,":[75],"simplified,":[76],"and":[77,92,112],"submitted":[78],"Boolean":[81],"minimization.":[82],"The":[83,106],"resulting":[84],"circuit":[85],"was":[86,110],"implemented":[87],"reconfigurable":[89],"parallel":[90],"hardware":[91],"evaluated":[93],"five-fold":[96],"cross-validation":[97],"procedure,":[98],"run":[99],"second":[102],"level":[103],"parallelism.":[105],"average":[107],"accuracy":[108],"achieved":[109],"90.41%":[111],"it":[113],"takes":[114],"18":[115],"ns":[116],"process":[118],"each":[119],"record":[121],"60":[123],"nucleotides.":[124]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}