{"id":"https://openalex.org/W2973566078","doi":"https://doi.org/10.1142/s0129054119400288","title":"Self-Attraction Removal from Oritatami Systems","display_name":"Self-Attraction Removal from Oritatami Systems","publication_year":2019,"publication_date":"2019-09-01","ids":{"openalex":"https://openalex.org/W2973566078","doi":"https://doi.org/10.1142/s0129054119400288","mag":"2973566078"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054119400288","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054119400288","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077698683","display_name":"Yo-Sub Han","orcid":"https://orcid.org/0000-0002-7211-6657"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yo-Sub Han","raw_affiliation_strings":["Department of Computer Science, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul 03722, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul 03722, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053793605","display_name":"Hwee Kim","orcid":"https://orcid.org/0000-0001-9915-9756"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hwee Kim","raw_affiliation_strings":["Department of Computer Science, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul 03722, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul 03722, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050043213","display_name":"Trent A. Rogers","orcid":"https://orcid.org/0000-0003-4124-0927"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trent A. Rogers","raw_affiliation_strings":["Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, AR, 72701, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, AR, 72701, USA","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002387043","display_name":"Shinnosuke Seki","orcid":"https://orcid.org/0000-0002-0276-3322"},"institutions":[{"id":"https://openalex.org/I20529979","display_name":"University of Electro-Communications","ror":"https://ror.org/02x73b849","country_code":"JP","type":"education","lineage":["https://openalex.org/I20529979"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shinnosuke Seki","raw_affiliation_strings":["Department of Computer and Network Engineering, University of Electro-Communications, 1-5-1, Chofugaoka, Chofu, Tokyo 1828585, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Network Engineering, University of Electro-Communications, 1-5-1, Chofugaoka, Chofu, Tokyo 1828585, Japan","institution_ids":["https://openalex.org/I20529979"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002387043"],"corresponding_institution_ids":["https://openalex.org/I20529979"],"apc_list":null,"apc_paid":null,"fwci":0.0852,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.47165442,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"30","issue":"06n07","first_page":"1047","last_page":"1067"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.692898154258728},{"id":"https://openalex.org/keywords/phenomenon","display_name":"Phenomenon","score":0.6235040426254272},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5372310876846313},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5303728580474854},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5173999071121216},{"id":"https://openalex.org/keywords/bead","display_name":"Bead","score":0.5109668970108032},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5067489743232727},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4857335686683655},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3765387237071991},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.28862589597702026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23557829856872559},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19564706087112427},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18087276816368103},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11936131119728088},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.09287616610527039}],"concepts":[{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.692898154258728},{"id":"https://openalex.org/C50335755","wikidata":"https://www.wikidata.org/wiki/Q483247","display_name":"Phenomenon","level":2,"score":0.6235040426254272},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5372310876846313},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5303728580474854},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5173999071121216},{"id":"https://openalex.org/C109386097","wikidata":"https://www.wikidata.org/wiki/Q1053956","display_name":"Bead","level":2,"score":0.5109668970108032},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5067489743232727},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4857335686683655},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3765387237071991},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.28862589597702026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23557829856872559},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19564706087112427},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18087276816368103},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11936131119728088},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.09287616610527039},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0129054119400288","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054119400288","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G2042773230","display_name":null,"funder_award_id":"2015R1D1A1A01060097","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G7255220517","display_name":null,"funder_award_id":"2017K2A9A2A08000270","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W119925751","https://openalex.org/W1831806611","https://openalex.org/W1993277918","https://openalex.org/W2000567812","https://openalex.org/W2013284377","https://openalex.org/W2027129928","https://openalex.org/W2050994027","https://openalex.org/W2062802768","https://openalex.org/W2063465004","https://openalex.org/W2070783600","https://openalex.org/W2086507196","https://openalex.org/W2104295426","https://openalex.org/W2135520597","https://openalex.org/W2467767398","https://openalex.org/W2533314863","https://openalex.org/W2620667968","https://openalex.org/W2772803310","https://openalex.org/W2810821164","https://openalex.org/W2963879125","https://openalex.org/W3101892452","https://openalex.org/W4255005259"],"related_works":["https://openalex.org/W2214207600","https://openalex.org/W2365199807","https://openalex.org/W2526113930","https://openalex.org/W2607396983","https://openalex.org/W2366917155","https://openalex.org/W164812092","https://openalex.org/W2496671178","https://openalex.org/W2119623590","https://openalex.org/W4300450609","https://openalex.org/W3186909272"],"abstract_inverted_index":{"RNA":[0,10,24],"cotranscriptional":[1],"folding":[2],"refers":[3],"to":[4,57],"the":[5,66,80,96,100,110,114],"phenomenon":[6],"in":[7,99],"which":[8,34,71,106],"an":[9,23],"transcript":[11],"folds":[12],"upon":[13],"itself":[14],"while":[15],"being":[16],"synthesized":[17],"out":[18],"of":[19,31,38,68,79,95,102,112],"a":[20,28,44,73,84],"gene":[21],"by":[22],"polymerase.":[25],"Oritatami":[26],"is":[27,93],"computational":[29],"model":[30],"this":[32,62],"phenomenon,":[33],"lets":[35,72],"its":[36,58,90],"sequence":[37],"beads":[39,55],"(abstract":[40],"molecules)":[41],"taken":[42],"from":[43,83],"finite":[45],"alphabet":[46],"[Formula:":[47],"see":[48],"text]":[49],"fold":[50],"cotranscriptionally":[51],"via":[52],"interactions":[53],"between":[54],"according":[56],"rule":[59],"set.":[60],"In":[61],"paper,":[63],"we":[64],"study":[65],"problem":[67],"removing":[69],"self-attractions,":[70],"bead":[74,78],"interact":[75],"with":[76],"another":[77],"same":[81],"kind,":[82],"given":[85],"oritatami":[86,104,115],"system":[87],"without":[88],"changing":[89],"behavior.":[91],"Self-attraction":[92],"one":[94],"major":[97],"challenges":[98],"construction":[101],"intrinsic":[103],"systems,":[105],"can":[107],"simulate":[108],"even":[109],"dynamics":[111],"all":[113],"systems.":[116]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
