{"id":"https://openalex.org/W2906727230","doi":"https://doi.org/10.1142/s0129054118430013","title":"Improved Compression of DNA Sequencing Data with Cascading Bloom Filters","display_name":"Improved Compression of DNA Sequencing Data with Cascading Bloom Filters","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2906727230","doi":"https://doi.org/10.1142/s0129054118430013","mag":"2906727230"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054118430013","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054118430013","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109515342","display_name":"Kamil Salikhov","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["FR","RU"],"is_corresponding":true,"raw_author_name":"Kamil Salikhov","raw_affiliation_strings":["LIGM, Universit\u00e9 Paris-Est Marne-la-Vall\u00e9e, France","Mechanics and Mathematics Department, Lomonosov Moscow State University, Russia","Laboratoire d'Informatique Gaspard-Monge"],"affiliations":[{"raw_affiliation_string":"LIGM, Universit\u00e9 Paris-Est Marne-la-Vall\u00e9e, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]},{"raw_affiliation_string":"Mechanics and Mathematics Department, Lomonosov Moscow State University, Russia","institution_ids":["https://openalex.org/I19880235"]},{"raw_affiliation_string":"Laboratoire d'Informatique Gaspard-Monge","institution_ids":["https://openalex.org/I4210152518"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5109515342"],"corresponding_institution_ids":["https://openalex.org/I19880235","https://openalex.org/I4210152518","https://openalex.org/I4210154111"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12545377,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"29","issue":"08","first_page":"1249","last_page":"1255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bloom-filter","display_name":"Bloom filter","score":0.904568076133728},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.8207166790962219},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.6733991503715515},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6585909724235535},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5441123843193054},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.5429984331130981},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5218100547790527},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.4803851246833801},{"id":"https://openalex.org/keywords/compression-ratio","display_name":"Compression ratio","score":0.42236223816871643},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.41314810514450073},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.388372004032135},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37319427728652954},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3227054476737976},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18325239419937134},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15911874175071716},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11973732709884644},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1101674735546112}],"concepts":[{"id":"https://openalex.org/C147224247","wikidata":"https://www.wikidata.org/wiki/Q885373","display_name":"Bloom filter","level":2,"score":0.904568076133728},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.8207166790962219},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.6733991503715515},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6585909724235535},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5441123843193054},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.5429984331130981},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5218100547790527},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.4803851246833801},{"id":"https://openalex.org/C25797200","wikidata":"https://www.wikidata.org/wiki/Q828137","display_name":"Compression ratio","level":3,"score":0.42236223816871643},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.41314810514450073},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.388372004032135},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37319427728652954},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3227054476737976},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18325239419937134},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15911874175071716},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11973732709884644},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1101674735546112},{"id":"https://openalex.org/C171146098","wikidata":"https://www.wikidata.org/wiki/Q124192","display_name":"Automotive engineering","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C511840579","wikidata":"https://www.wikidata.org/wiki/Q12757","display_name":"Internal combustion engine","level":2,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1142/s0129054118430013","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054118430013","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-03570350v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03570350","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.worldscientific.com/doi/abs/10.1142/S0129054118430013","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1931027898","https://openalex.org/W2092880969","https://openalex.org/W2100076391","https://openalex.org/W2101247207","https://openalex.org/W2111044311","https://openalex.org/W2130419122","https://openalex.org/W2131106408","https://openalex.org/W2138196010","https://openalex.org/W2159084616","https://openalex.org/W2159906372","https://openalex.org/W2167943254","https://openalex.org/W2170727800","https://openalex.org/W2198888083"],"related_works":["https://openalex.org/W2948148442","https://openalex.org/W2461250372","https://openalex.org/W2081869611","https://openalex.org/W2394342941","https://openalex.org/W2169853506","https://openalex.org/W2547124190","https://openalex.org/W1558425494","https://openalex.org/W2350586049","https://openalex.org/W2385628723","https://openalex.org/W3080614128"],"abstract_inverted_index":{"Modern":[0],"DNA":[1,13],"sequencing":[2],"technologies":[3],"generate":[4],"prodigious":[5],"volumes":[6],"of":[7,11,41,56],"sequence":[8],"data":[9,20],"consisting":[10],"short":[12],"fragments":[14],"(reads).":[15],"Storing":[16],"and":[17],"transferring":[18],"this":[19,25,35],"is":[21],"often":[22],"challenging.":[23],"With":[24],"motivation,":[26],"several":[27],"specialized":[28],"compression":[29,45],"methods":[30],"have":[31],"been":[32],"developed.":[33],"In":[34],"paper,":[36],"we":[37,66],"present":[38],"an":[39],"improvement":[40],"the":[42,54],"lossless":[43],"reference-free":[44],"algorithm,":[46],"suggested":[47],"by":[48],"Rozov":[49],"et":[50],"al.,":[51],"based":[52],"on":[53,63],"technique":[55],"cascading":[57],"Bloom":[58],"filters.":[59],"Through":[60],"computational":[61],"experiments":[62],"real":[64],"data,":[65],"demonstrate":[67],"that":[68],"our":[69],"method":[70],"results":[71],"in":[72,78],"a":[73],"significant":[74],"associated":[75],"memory":[76],"reduction":[77],"practice.":[79]},"counts_by_year":[],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
