{"id":"https://openalex.org/W2101304591","doi":"https://doi.org/10.1142/s0129054113400042","title":"MINIMUM MOSAIC INFERENCE OF A SET OF RECOMBINANTS","display_name":"MINIMUM MOSAIC INFERENCE OF A SET OF RECOMBINANTS","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2101304591","doi":"https://doi.org/10.1142/s0129054113400042","mag":"2101304591"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054113400042","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054113400042","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://basepub.dauphine.fr/handle/123456789/11456","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036752760","display_name":"Guillaume Blin","orcid":"https://orcid.org/0000-0002-0708-0838"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2800365227","display_name":"Paris-Est Sup","ror":"https://ror.org/0268ecp52","country_code":"FR","type":"education","lineage":["https://openalex.org/I2800365227"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"GUILLAUME BLIN","raw_affiliation_strings":["Universit\u00e9 Paris-Est, LIGM - UMR CNRS 8049, France","Laboratoire d'Informatique Gaspard-Monge"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Est, LIGM - UMR CNRS 8049, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2800365227","https://openalex.org/I4210152518"]},{"raw_affiliation_string":"Laboratoire d'Informatique Gaspard-Monge","institution_ids":["https://openalex.org/I4210152518"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061874157","display_name":"Rom\u00e9o Rizzi","orcid":"https://orcid.org/0000-0002-2387-0952"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]},{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"ROMEO RIZZI","raw_affiliation_strings":["Department of Computer Science, University of Verona, Italy","Dipartimento di Matematica e Informatica - Universita Udine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Verona, Italy","institution_ids":["https://openalex.org/I119439378"]},{"raw_affiliation_string":"Dipartimento di Matematica e Informatica - Universita Udine","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020696498","display_name":"Florian Sikora","orcid":"https://orcid.org/0000-0003-2670-6258"},"institutions":[{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I56435720","display_name":"Universit\u00e9 Paris Dauphine-PSL","ror":"https://ror.org/052bz7812","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580","https://openalex.org/I56435720"]},{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE","FR"],"is_corresponding":false,"raw_author_name":"FLORIAN SIKORA","raw_affiliation_strings":["Lehrstuhl f\u00fcr Bioinformatik, Friedrich-Schiller-Universit\u00e4t Jena, Germany","Universit\u00e9 Paris-Dauphine, LAMSADE, France","Laboratoire d'Informatique Gaspard-Monge"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lehrstuhl f\u00fcr Bioinformatik, Friedrich-Schiller-Universit\u00e4t Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Universit\u00e9 Paris-Dauphine, LAMSADE, France","institution_ids":["https://openalex.org/I56435720"]},{"raw_affiliation_string":"Laboratoire d'Informatique Gaspard-Monge","institution_ids":["https://openalex.org/I4210152518"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027495509","display_name":"St\u00e9phane Vialette","orcid":"https://orcid.org/0000-0003-2308-6970"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2800365227","display_name":"Paris-Est Sup","ror":"https://ror.org/0268ecp52","country_code":"FR","type":"education","lineage":["https://openalex.org/I2800365227"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"STEPHANE VIALETTE","raw_affiliation_strings":["Universit\u00e9 Paris-Est, LIGM - UMR CNRS 8049, France","Laboratoire d'Informatique Gaspard-Monge"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Est, LIGM - UMR CNRS 8049, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2800365227","https://openalex.org/I4210152518"]},{"raw_affiliation_string":"Laboratoire d'Informatique Gaspard-Monge","institution_ids":["https://openalex.org/I4210152518"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10548435,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"01","first_page":"51","last_page":"66"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.7918999791145325,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.7918999791145325,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.031700000166893005,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10948","display_name":"Advanced Combinatorial Mathematics","score":0.02239999920129776,"subfield":{"id":"https://openalex.org/subfields/2607","display_name":"Discrete Mathematics and Combinatorics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mosaic","display_name":"Mosaic","score":0.7529090642929077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5851722359657288},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5477931499481201},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47139742970466614},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33147746324539185},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10469445586204529},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06911706924438477}],"concepts":[{"id":"https://openalex.org/C110739175","wikidata":"https://www.wikidata.org/wiki/Q133067","display_name":"Mosaic","level":2,"score":0.7529090642929077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5851722359657288},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5477931499481201},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47139742970466614},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33147746324539185},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10469445586204529},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06911706924438477},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1142/s0129054113400042","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054113400042","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.395.9067","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.395.9067","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal-enpc.archives-ouvertes.fr/docs/00/67/92/69/PDF/hal.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.395.9808","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.395.9808","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal-enpc.archives-ouvertes.fr/docs/00/62/03/71/PDF/hal.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00620371v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00620371","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"17th Computing: the Australasian Theory Symposium (CATS'11), Jan 2011, Perth, Australia. pp.23-30","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:HAL:hal-00679269v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00679269","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Foundations of Computer Science, 2013, 24 (1), pp.51-66. ⟨10.1142/S0129054113400042⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:basepub.dauphine.fr:123456789/11456","is_oa":true,"landing_page_url":"https://basepub.dauphine.fr/handle/123456789/11456","pdf_url":null,"source":{"id":"https://openalex.org/S4306401007","display_name":"Base Institutionnelle de Recherche de l'universit\u00e9 Paris-Dauphine (BIRD) (University Paris-Dauphine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102197404","host_organization_name":"Universit\u00e9 Paris-Sud","host_organization_lineage":["https://openalex.org/I102197404"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article accept\u00e9 pour publication ou publi\u00e9"},{"id":"pmh:oai:basepub.dauphine.psl.eu:123456789/11456","is_oa":false,"landing_page_url":"https://hal-upec-upem.archives-ouvertes.fr/hal-00679269","pdf_url":null,"source":{"id":"https://openalex.org/S4306401007","display_name":"Base Institutionnelle de Recherche de l'universit\u00e9 Paris-Dauphine (BIRD) (University Paris-Dauphine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102197404","host_organization_name":"Universit\u00e9 Paris-Sud","host_organization_lineage":["https://openalex.org/I102197404"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article accept\u00e9 pour publication ou publi\u00e9"}],"best_oa_location":{"id":"pmh:oai:basepub.dauphine.fr:123456789/11456","is_oa":true,"landing_page_url":"https://basepub.dauphine.fr/handle/123456789/11456","pdf_url":null,"source":{"id":"https://openalex.org/S4306401007","display_name":"Base Institutionnelle de Recherche de l'universit\u00e9 Paris-Dauphine (BIRD) (University Paris-Dauphine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102197404","host_organization_name":"Universit\u00e9 Paris-Sud","host_organization_lineage":["https://openalex.org/I102197404"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article accept\u00e9 pour publication ou publi\u00e9"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1987646246","https://openalex.org/W2079795452","https://openalex.org/W2110917138"],"related_works":["https://openalex.org/W3107474891","https://openalex.org/W2367950322","https://openalex.org/W2355215981","https://openalex.org/W86463150","https://openalex.org/W4289528260","https://openalex.org/W2911297108","https://openalex.org/W1480922982","https://openalex.org/W196405095","https://openalex.org/W2811373610","https://openalex.org/W2153798176"],"abstract_inverted_index":{"In":[0,108],"this":[1,109,180],"paper,":[2],"we":[3,111],"investigate":[4],"the":[5,47,52,58,61,79,89,95,100,105,114,128,137,146,164,190],"central":[6],"problem":[7,117,167],"of":[8,23,27,46,54,60,76,102,130,136,179,189],"finding":[9],"recombination":[10,33],"events.":[11],"It":[12],"is":[13,20,73,88,125,132,168,182],"commonly":[14],"assumed":[15],"that":[16,113,158,163],"a":[17,21,24,43,67,71,171,185],"present":[18,68],"population":[19],"descendent":[22],"small":[25],"number":[26,101,129],"specific":[28],"sequences":[29,87],"called":[30],"founders.":[31,80,107],"The":[32,177],"process":[34],"consists":[35],"in":[36],"given":[37,118,133],"two":[38],"equal":[39],"length":[40,49],"sequences,":[41],"generates":[42],"third":[44],"sequence":[45,56,69],"same":[48],"by":[50],"concatenating":[51],"prefix":[53],"one":[55],"with":[57,121],"suffix":[59],"other":[62],"sequence.":[63],"Due":[64],"to":[65,85,183],"recombination,":[66],"(called":[70],"recombinant)":[72],"thus":[74],"composed":[75],"blocks":[77],"from":[78],"A":[81],"major":[82],"question":[83],"related":[84],"founder":[86],"so-called":[90],"Minimum":[91,115,165],"Mosaic":[92,116,166],"problem:":[93],"using":[94,170],"natural":[96],"parsimony":[97],"criterion":[98],"for":[99,145],"recombinations,":[103],"find":[104],"\"best\"":[106],"article,":[110],"prove":[112],"haplotype":[119],"recombinants":[120],"no":[122],"missing":[123],"values":[124],"NP-hard":[126,169],"when":[127],"founders":[131],"as":[134],"part":[135],"input":[138],"and":[139,160],"propose":[140],"some":[141,154],"exact":[142],"exponential-time":[143],"algorithms":[144],"problem,":[147],"which":[148],"can":[149],"be":[150],"considered":[151],"polynomial":[152],"provided":[153],"extra":[155],"information.":[156],"Notice":[157],"Rastas":[159],"Ukkonen":[161],"proved":[162],"somewhat":[172],"unrealistic":[173],"mutation":[174],"cost":[175],"function.":[176],"aim":[178],"paper":[181],"provide":[184],"better":[186],"complexity":[187],"insight":[188],"problem.":[191]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}