{"id":"https://openalex.org/W1986699112","doi":"https://doi.org/10.1142/s0129054111007812","title":"<font>P</font>SYSTEMS WITH PROTEINS ON MEMBRANES: A SURVEY","display_name":"<font>P</font>SYSTEMS WITH PROTEINS ON MEMBRANES: A SURVEY","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W1986699112","doi":"https://doi.org/10.1142/s0129054111007812","mag":"1986699112"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054111007812","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054111007812","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018378071","display_name":"Andrei P\u0103un","orcid":"https://orcid.org/0000-0002-1644-8198"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]},{"id":"https://openalex.org/I141595442","display_name":"University of Bucharest","ror":"https://ror.org/02x2v6p15","country_code":"RO","type":"education","lineage":["https://openalex.org/I141595442"]},{"id":"https://openalex.org/I4210115638","display_name":"National Institute of Research and Development for Biological Sciences","ror":"https://ror.org/028wkbm97","country_code":"RO","type":"facility","lineage":["https://openalex.org/I4210115638"]},{"id":"https://openalex.org/I919208787","display_name":"Louisiana Tech University","ror":"https://ror.org/04q9esz89","country_code":"US","type":"education","lineage":["https://openalex.org/I2799628689","https://openalex.org/I919208787"]}],"countries":["ES","RO","US"],"is_corresponding":true,"raw_author_name":"ANDREI P\u0102UN","raw_affiliation_strings":["Computer Science, FMI, University of Bucharest, Bucharest, Romania","Computer Science/IfM, Louisiana Tech University, Ruston, USA","Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","National Institute of R&amp;D for Biological Sciences, Bucharest, Romania"],"affiliations":[{"raw_affiliation_string":"Computer Science, FMI, University of Bucharest, Bucharest, Romania","institution_ids":["https://openalex.org/I141595442"]},{"raw_affiliation_string":"Computer Science/IfM, Louisiana Tech University, Ruston, USA","institution_ids":["https://openalex.org/I919208787"]},{"raw_affiliation_string":"Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"National Institute of R&amp;D for Biological Sciences, Bucharest, Romania","institution_ids":["https://openalex.org/I4210115638"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005550984","display_name":"Mihaela P\u0103un","orcid":"https://orcid.org/0000-0002-3342-9140"},"institutions":[{"id":"https://openalex.org/I919208787","display_name":"Louisiana Tech University","ror":"https://ror.org/04q9esz89","country_code":"US","type":"education","lineage":["https://openalex.org/I2799628689","https://openalex.org/I919208787"]},{"id":"https://openalex.org/I107502644","display_name":"Spiru Haret University","ror":"https://ror.org/01qkq8c66","country_code":"RO","type":"education","lineage":["https://openalex.org/I107502644"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES","RO","US"],"is_corresponding":false,"raw_author_name":"MIHAELA P\u0102UN","raw_affiliation_strings":["Department of Mathematics and Statistics, Louisiana Tech University, P.O. Box 10348, Ruston, LA 71272, USA","Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo s/n, Boadilla del Monte, 28660 Madrid, Spain","Spiru Haret University, Bucharest, Romania"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, Louisiana Tech University, P.O. Box 10348, Ruston, LA 71272, USA","institution_ids":["https://openalex.org/I919208787"]},{"raw_affiliation_string":"Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo s/n, Boadilla del Monte, 28660 Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Spiru Haret University, Bucharest, Romania","institution_ids":["https://openalex.org/I107502644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049425478","display_name":"Alfonso Rodr\u00edguez\u2010Pat\u00f3n","orcid":"https://orcid.org/0000-0001-7289-2114"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"ALFONSO RODR\u00cdGUEZ-PAT\u00d3N","raw_affiliation_strings":["Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo s/n, Boadilla del Monte, 28660 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegancedo s/n, Boadilla del Monte, 28660 Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053815031","display_name":"Manuela Sidoroff","orcid":"https://orcid.org/0000-0001-8740-3803"},"institutions":[{"id":"https://openalex.org/I4210115638","display_name":"National Institute of Research and Development for Biological Sciences","ror":"https://ror.org/028wkbm97","country_code":"RO","type":"facility","lineage":["https://openalex.org/I4210115638"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"MANUELA SIDOROFF","raw_affiliation_strings":["Bioinformatics Department, National Institute of R&amp;D for Biological Sciences, Splaiul Independen\u0163ei, Nr. 296, Sector 6, Bucharest, Romania"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, National Institute of R&amp;D for Biological Sciences, Splaiul Independen\u0163ei, Nr. 296, Sector 6, Bucharest, Romania","institution_ids":["https://openalex.org/I4210115638"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018378071"],"corresponding_institution_ids":["https://openalex.org/I141595442","https://openalex.org/I4210115638","https://openalex.org/I88060688","https://openalex.org/I919208787"],"apc_list":null,"apc_paid":null,"fwci":0.2606,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.56475368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"01","first_page":"39","last_page":"53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/membrane-computing","display_name":"Membrane computing","score":0.815401554107666},{"id":"https://openalex.org/keywords/antiporters","display_name":"Antiporters","score":0.7472158670425415},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.6494079828262329},{"id":"https://openalex.org/keywords/parallelism","display_name":"Parallelism (grammar)","score":0.5915799140930176},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.5845030546188354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5066996216773987},{"id":"https://openalex.org/keywords/antiporter","display_name":"Antiporter","score":0.44612494111061096},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4101565182209015},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3656858205795288},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.33155837655067444},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.20205020904541016},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1642666459083557}],"concepts":[{"id":"https://openalex.org/C96011364","wikidata":"https://www.wikidata.org/wiki/Q6815122","display_name":"Membrane computing","level":2,"score":0.815401554107666},{"id":"https://openalex.org/C2910532024","wikidata":"https://www.wikidata.org/wiki/Q2853339","display_name":"Antiporters","level":4,"score":0.7472158670425415},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.6494079828262329},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.5915799140930176},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.5845030546188354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5066996216773987},{"id":"https://openalex.org/C57181701","wikidata":"https://www.wikidata.org/wiki/Q2853339","display_name":"Antiporter","level":3,"score":0.44612494111061096},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4101565182209015},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3656858205795288},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.33155837655067444},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.20205020904541016},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1642666459083557}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0129054111007812","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054111007812","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W134510267","https://openalex.org/W146477491","https://openalex.org/W175979373","https://openalex.org/W1501119231","https://openalex.org/W1542878110","https://openalex.org/W1552027522","https://openalex.org/W1600165002","https://openalex.org/W1754127435","https://openalex.org/W1836318583","https://openalex.org/W1844663223","https://openalex.org/W1993832215","https://openalex.org/W1995326443","https://openalex.org/W2000541268","https://openalex.org/W2017227531","https://openalex.org/W2028802812","https://openalex.org/W2057225682","https://openalex.org/W2057985538","https://openalex.org/W2073362992","https://openalex.org/W2078808192","https://openalex.org/W2082008993","https://openalex.org/W2085484366","https://openalex.org/W2109063488","https://openalex.org/W2109926791","https://openalex.org/W2113997157","https://openalex.org/W2116509046","https://openalex.org/W2395938105","https://openalex.org/W2408316610","https://openalex.org/W2913004508","https://openalex.org/W2913224511","https://openalex.org/W4253060067","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2023505575","https://openalex.org/W1608806855","https://openalex.org/W1850053445","https://openalex.org/W1491899005","https://openalex.org/W1972912085","https://openalex.org/W1578204257","https://openalex.org/W3085352435","https://openalex.org/W2047588290","https://openalex.org/W3095555187","https://openalex.org/W1986699112"],"abstract_inverted_index":{"The":[0,47,66,85],"paper":[1,35],"is":[2,79,99],"a":[3,89,127,130,134],"survey":[4],"of":[5,9,31,36,54,63,69,118,141],"the":[6,32,61,70,75,93,95,116,119,139,146],"recent":[7],"model":[8,24,49,71,87],"P":[10,42,64],"systems":[11,43],"with":[12,136],"proteins":[13,143],"on":[14,45],"membranes":[15],"introduced":[16],"by":[17,126],"P\u0103un":[18,39],"and":[19,38,105],"Popa":[20],"in":[21,60,82,91,101,103,145],"2006.":[22],"This":[23],"can":[25,122],"be":[26,124],"viewed":[27],"as":[28],"an":[29,51],"extension":[30],"highly":[33],"successful":[34],"(P\u0103un":[37],"2002)":[40],"describing":[41],"based":[44],"symport/antiport.":[46],"previous":[48],"represented":[50],"important":[52],"change":[53],"direction":[55],"from":[56,72],"strings":[57],"to":[58,138],"objects":[59],"area":[62],"systems.":[65],"main":[67],"drawback":[68],"2002":[73],"was":[74,88],"massive":[76],"parallelism":[77,94],"that":[78],"not":[80],"seen":[81],"real":[83],"life.":[84],"2006":[86],"step":[90],"controlling":[92],"same":[96],"way":[97],"it":[98],"done":[100],"nature":[102],"symporters":[104],"antiporters:":[106],"these":[107],"processes":[108],"take":[109],"place":[110],"through":[111],"protein":[112],"channels":[113],"embedded":[114,144],"at":[115,129],"level":[117],"membrane":[120],"which":[121],"only":[123],"used":[125],"molecule":[128],"time,":[131],"thus":[132],"yielding":[133],"sequentiality":[135],"respect":[137],"number":[140],"such":[142],"membrane.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
