{"id":"https://openalex.org/W2059427795","doi":"https://doi.org/10.1142/s0129054108005541","title":"INDEXING GAPPED-FACTORS USING A TREE","display_name":"INDEXING GAPPED-FACTORS USING A TREE","publication_year":2008,"publication_date":"2008-02-01","ids":{"openalex":"https://openalex.org/W2059427795","doi":"https://doi.org/10.1142/s0129054108005541","mag":"2059427795"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054108005541","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054108005541","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/inria-00179719","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012897398","display_name":"Pierre Peterlongo","orcid":"https://orcid.org/0000-0003-0776-6407"},"institutions":[{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"PIERRE PETERLONGO","raw_affiliation_strings":["INRIA / IRISA - CNRS, Rennes, France","Biological systems and models, bioinformatics and sequences"],"affiliations":[{"raw_affiliation_string":"INRIA / IRISA - CNRS, Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I1326498283","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Biological systems and models, bioinformatics and sequences","institution_ids":["https://openalex.org/I4210118410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019003791","display_name":"Julien Allali","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"JULIEN ALLALI","raw_affiliation_strings":["LaBRI, Universit\u00e9 de Bordeaux I, France","Laboratoire Bordelais de Recherche en Informatique"],"affiliations":[{"raw_affiliation_string":"LaBRI, Universit\u00e9 de Bordeaux I, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210160189"]},{"raw_affiliation_string":"Laboratoire Bordelais de Recherche en Informatique","institution_ids":["https://openalex.org/I4210142254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044540605","display_name":"Marie\u2010France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"MARIE-FRANCE SAGOT","raw_affiliation_strings":["INRIA Rh\u00f4ne-Alpes and Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, UMR 5558, Universit\u00e9 Claude Bernard, Lyon, France","King's College, London, UK"],"affiliations":[{"raw_affiliation_string":"INRIA Rh\u00f4ne-Alpes and Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, UMR 5558, Universit\u00e9 Claude Bernard, Lyon, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134"]},{"raw_affiliation_string":"King's College, London, UK","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012897398"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2802519937","https://openalex.org/I4210118410"],"apc_list":null,"apc_paid":null,"fwci":1.7161,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.87268953,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"19","issue":"01","first_page":"71","last_page":"87"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.8192199468612671},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.7972673177719116},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.701616644859314},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.6809538006782532},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.6375616192817688},{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.5840860605239868},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5783453583717346},{"id":"https://openalex.org/keywords/tree-structure","display_name":"Tree structure","score":0.5321955680847168},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.48770198225975037},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.473473459482193},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.43526309728622437},{"id":"https://openalex.org/keywords/indexation","display_name":"Indexation","score":0.42844918370246887},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.4196261167526245},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4004186987876892},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3731911778450012},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36814945936203003},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33789896965026855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21985101699829102},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.20748743414878845}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.8192199468612671},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.7972673177719116},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.701616644859314},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.6809538006782532},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.6375616192817688},{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.5840860605239868},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5783453583717346},{"id":"https://openalex.org/C163797641","wikidata":"https://www.wikidata.org/wiki/Q2067937","display_name":"Tree structure","level":3,"score":0.5321955680847168},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.48770198225975037},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.473473459482193},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.43526309728622437},{"id":"https://openalex.org/C186311912","wikidata":"https://www.wikidata.org/wiki/Q2038409","display_name":"Indexation","level":3,"score":0.42844918370246887},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.4196261167526245},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4004186987876892},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3731911778450012},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36814945936203003},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33789896965026855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21985101699829102},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.20748743414878845},{"id":"https://openalex.org/C126285488","wikidata":"https://www.wikidata.org/wiki/Q178476","display_name":"Monetary policy","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C556758197","wikidata":"https://www.wikidata.org/wiki/Q580018","display_name":"Monetary economics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1142/s0129054108005541","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054108005541","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-00428238v1","is_oa":false,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-00428238","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"incollection","raw_type":"\\ninfo:eu-repo/semantics/article\\n"},{"id":"pmh:oai:HAL:inria-00179719v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00179719","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Foundations of Computer Science, 2008, 19 (1), pp.71-87. &#x27E8;10.1142/S0129054108005541&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"pmh:oai:HAL:inria-00179719v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00179719","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Foundations of Computer Science, 2008, 19 (1), pp.71-87. &#x27E8;10.1142/S0129054108005541&#x27E9;","raw_type":"Journal articles"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1482360569","https://openalex.org/W1482802109","https://openalex.org/W1518105754","https://openalex.org/W1583518118","https://openalex.org/W1714821586","https://openalex.org/W1887000090","https://openalex.org/W1955121107","https://openalex.org/W1961096930","https://openalex.org/W1975136411","https://openalex.org/W1990061958","https://openalex.org/W2028445324","https://openalex.org/W2029195137","https://openalex.org/W2052890777","https://openalex.org/W2055043387","https://openalex.org/W2058759221","https://openalex.org/W2059513841","https://openalex.org/W2089052894","https://openalex.org/W2102450363","https://openalex.org/W2103706581","https://openalex.org/W2107248520","https://openalex.org/W2115579441","https://openalex.org/W2121252285","https://openalex.org/W2128591967","https://openalex.org/W2132926880","https://openalex.org/W2136741147","https://openalex.org/W2155237411","https://openalex.org/W2158714788","https://openalex.org/W2161936973","https://openalex.org/W2162114340","https://openalex.org/W2610007109"],"related_works":["https://openalex.org/W2102450363","https://openalex.org/W2070949798","https://openalex.org/W75168880","https://openalex.org/W1593730394","https://openalex.org/W1590204465","https://openalex.org/W2586037276","https://openalex.org/W1608420182","https://openalex.org/W1568850903","https://openalex.org/W2053292606","https://openalex.org/W2560606564"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,7,21,24,48,51,74],"data":[3,33,63,75],"structure":[4,34,64,76],"to":[5],"index":[6],"specific":[8],"kind":[9],"of":[10,14,47,54,61],"factors,":[11],"that":[12,26],"is":[13,20,27,36,65],"substrings,":[15],"called":[16],"gapped-factors.":[17],"A":[18],"gapped-factor":[19],"factor":[22],"containing":[23],"gap":[25],"ignored":[28],"during":[29],"the":[30,39,45],"indexation.":[31],"The":[32,59],"presented":[35],"based":[37],"on":[38],"suffix":[40],"tree":[41],"and":[42,56,71,86],"indexes":[43],"all":[44],"gapped-factors":[46],"text":[49,93],"with":[50],"fixed":[52],"size":[53],"gap,":[55],"only":[57],"those.":[58],"construction":[60],"this":[62],"done":[66],"online":[67],"in":[68,82,92],"linear":[69],"time":[70],"space.":[72],"Such":[73],"may":[77],"play":[78],"an":[79],"important":[80],"role":[81],"various":[83],"pattern":[84],"matching":[85],"motif":[87],"inference":[88],"problems,":[89],"for":[90],"instance":[91],"filtration.":[94]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
