{"id":"https://openalex.org/W2110747513","doi":"https://doi.org/10.1142/s0129054106003875","title":"PAMA: A FAST STRING MATCHING ALGORITHM","display_name":"PAMA: A FAST STRING MATCHING ALGORITHM","publication_year":2006,"publication_date":"2006-04-01","ids":{"openalex":"https://openalex.org/W2110747513","doi":"https://doi.org/10.1142/s0129054106003875","mag":"2110747513"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054106003875","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054106003875","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044023807","display_name":"Shiyong Lu","orcid":"https://orcid.org/0000-0002-7864-1815"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"SHIYONG LU","raw_affiliation_strings":["Wayne State University, Detroit, MI 48202, USA","Computer Science, Center for Traumatic Brain Injury"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University, Detroit, MI 48202, USA","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Computer Science, Center for Traumatic Brain Injury","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071092639","display_name":"Feng Ping Cao","orcid":"https://orcid.org/0009-0007-2865-4195"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"FENG CAO","raw_affiliation_strings":["Wayne State University, Detroit, MI 48202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University, Detroit, MI 48202, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100661757","display_name":"Yi Lu","orcid":"https://orcid.org/0000-0001-7994-7798"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"YI LU","raw_affiliation_strings":["Wayne State University, Detroit, MI 48202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University, Detroit, MI 48202, USA","institution_ids":["https://openalex.org/I185443292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I185443292"],"apc_list":null,"apc_paid":null,"fwci":0.4622,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.7474035,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":"02","first_page":"357","last_page":"378"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.8120936155319214},{"id":"https://openalex.org/keywords/approximate-string-matching","display_name":"Approximate string matching","score":0.6767340302467346},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6676223278045654},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6316621899604797},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.6172177195549011},{"id":"https://openalex.org/keywords/boyer\u2013moore-string-search-algorithm","display_name":"Boyer\u2013Moore string search algorithm","score":0.6077777743339539},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.5352320075035095},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.5279223918914795},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.5257583260536194},{"id":"https://openalex.org/keywords/commentz-walter-algorithm","display_name":"Commentz-Walter algorithm","score":0.5221484303474426},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.5170679688453674},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.441337913274765},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.4345477819442749},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4222361445426941},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22193968296051025},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1714887022972107},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.15441599488258362},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10249480605125427}],"concepts":[{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.8120936155319214},{"id":"https://openalex.org/C32610155","wikidata":"https://www.wikidata.org/wiki/Q1798621","display_name":"Approximate string matching","level":3,"score":0.6767340302467346},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6676223278045654},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6316621899604797},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.6172177195549011},{"id":"https://openalex.org/C80701825","wikidata":"https://www.wikidata.org/wiki/Q895984","display_name":"Boyer\u2013Moore string search algorithm","level":5,"score":0.6077777743339539},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.5352320075035095},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.5279223918914795},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.5257583260536194},{"id":"https://openalex.org/C13052355","wikidata":"https://www.wikidata.org/wiki/Q5152399","display_name":"Commentz-Walter algorithm","level":4,"score":0.5221484303474426},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.5170679688453674},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.441337913274765},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.4345477819442749},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4222361445426941},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22193968296051025},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1714887022972107},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.15441599488258362},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10249480605125427},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0129054106003875","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054106003875","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8399999737739563,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W650499023","https://openalex.org/W938539187","https://openalex.org/W1532280479","https://openalex.org/W1596603109","https://openalex.org/W1973130965","https://openalex.org/W1976978590","https://openalex.org/W1985108724","https://openalex.org/W1986106281","https://openalex.org/W2054153172","https://openalex.org/W2054418412","https://openalex.org/W2134826720"],"related_works":["https://openalex.org/W2054173104","https://openalex.org/W2051764263","https://openalex.org/W3145288231","https://openalex.org/W2111239386","https://openalex.org/W1552046427","https://openalex.org/W2358632292","https://openalex.org/W2160046506","https://openalex.org/W206460701","https://openalex.org/W2525946144","https://openalex.org/W2110747513"],"abstract_inverted_index":{"String":[0],"matching":[1,36,80],"is":[2],"a":[3,33],"fundamental":[4],"operation":[5],"in":[6,119],"computer":[7],"science,":[8],"and":[9,24,55,123,132],"its":[10],"performance":[11],"has":[12],"great":[13],"impact":[14],"on":[15],"many":[16],"applications":[17],"including":[18],"database":[19],"query,":[20],"text":[21],"processing,":[22],"DNA":[23],"protein":[25],"sequence":[26],"analysis.":[27],"In":[28],"this":[29],"paper,":[30],"we":[31,83,108],"propose":[32],"fast":[34],"string":[35,79],"algorithm,":[37,65],"PAMA":[38,46,94,111],"(PAttern":[39],"MAtching).":[40],"The":[41],"shift":[42,92],"rule":[43,54,59],"used":[44],"by":[45,61],"not":[47],"only":[48],"subsumes":[49],"both":[50],"the":[51,56,62,78,87,90,104,115],"bad":[52],"character":[53],"good":[57],"suffix":[58],"employed":[60],"well-known":[63],"Boyer-Moore":[64,105,117,126],"but":[66],"also":[67],"employs":[68],"an":[69],"additional":[70],"key":[71],"observation":[72],"to":[73],"enable":[74],"faster":[75],"shifting":[76],"during":[77],"process.":[81],"Theoretically,":[82],"prove":[84],"that":[85,102,110],"from":[86],"same":[88],"alignment,":[89],"next":[91],"of":[93,103],"will":[95],"be":[96],"at":[97],"least":[98],"as":[99,101,129],"much":[100],"algorithm.":[106],"Experimentally,":[107],"show":[109],"indeed":[112],"significantly":[113],"outperforms":[114,124],"original":[116],"algorithm":[118],"almost":[120],"all":[121],"cases,":[122],"other":[125],"variants":[127],"such":[128],"Tuned-BM,":[130],"Turbo-BM":[131],"Horspool":[133],"for":[134,141],"long":[135],"patterns":[136],"(length":[137],"\u2265":[138],"128)":[139],"or":[140],"small":[142],"alphabets":[143],"(size":[144],"&lt;":[145],"8).":[146]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
