{"id":"https://openalex.org/W2098402986","doi":"https://doi.org/10.1142/s0129054105003091","title":"FORMAL MODELLING OF VIRAL GENE COMPRESSION","display_name":"FORMAL MODELLING OF VIRAL GENE COMPRESSION","publication_year":2005,"publication_date":"2005-06-01","ids":{"openalex":"https://openalex.org/W2098402986","doi":"https://doi.org/10.1142/s0129054105003091","mag":"2098402986"},"language":"en","primary_location":{"id":"doi:10.1142/s0129054105003091","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054105003091","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059512715","display_name":"Mark Daley","orcid":"https://orcid.org/0000-0002-6939-9772"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"MARK DALEY","raw_affiliation_strings":["University of Saskatchewan, Saskatoon, Saskatchewan, Canada","University of Western Ontario, London, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"University of Saskatchewan, Saskatoon, Saskatchewan, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"University of Western Ontario, London, Ontario, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040385755","display_name":"Ian McQuillan","orcid":"https://orcid.org/0000-0002-7998-4430"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"IAN MCQUILLAN","raw_affiliation_strings":["University of Western Ontario, London, Ontario, Canada","(University of Western Ontario, London, Ontario, Canada.)"],"affiliations":[{"raw_affiliation_string":"University of Western Ontario, London, Ontario, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"(University of Western Ontario, London, Ontario, Canada.)","institution_ids":["https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5059512715"],"corresponding_institution_ids":["https://openalex.org/I125749732","https://openalex.org/I32625721"],"apc_list":null,"apc_paid":null,"fwci":0.4387,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74018187,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"16","issue":"03","first_page":"453","last_page":"469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11567","display_name":"semigroups and automata theory","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.705267071723938},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.6391509771347046},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5488229990005493},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5183154344558716},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4595649838447571},{"id":"https://openalex.org/keywords/formal-language","display_name":"Formal language","score":0.4528454542160034},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4443187117576599},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36571723222732544},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3575705885887146},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3469616770744324},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2506350874900818},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13824668526649475},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.12996318936347961}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.705267071723938},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.6391509771347046},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5488229990005493},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5183154344558716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4595649838447571},{"id":"https://openalex.org/C146072743","wikidata":"https://www.wikidata.org/wiki/Q192161","display_name":"Formal language","level":2,"score":0.4528454542160034},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4443187117576599},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36571723222732544},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3575705885887146},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3469616770744324},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2506350874900818},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13824668526649475},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.12996318936347961}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0129054105003091","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0129054105003091","pdf_url":null,"source":{"id":"https://openalex.org/S68047077","display_name":"International Journal of Foundations of Computer Science","issn_l":"0129-0541","issn":["0129-0541","1793-6373"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Foundations of Computer Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8500000238418579,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1505482284","https://openalex.org/W1531964662","https://openalex.org/W1577059114","https://openalex.org/W1972770363","https://openalex.org/W2001737277","https://openalex.org/W2023999667","https://openalex.org/W2076858908","https://openalex.org/W2084868491"],"related_works":["https://openalex.org/W2361805396","https://openalex.org/W2972254340","https://openalex.org/W2022231341","https://openalex.org/W1805912688","https://openalex.org/W4255476312","https://openalex.org/W2373973507","https://openalex.org/W4250902763","https://openalex.org/W1969895229","https://openalex.org/W2108497208","https://openalex.org/W83562734"],"abstract_inverted_index":{"The":[0],"study":[1,64],"of":[2,23,36,42,58,77,90,106,114,120],"viruses":[3,43,62,116],"in":[4,15,32,61,102,123],"molecular":[5],"genetics,":[6],"as":[7,17],"biological":[8],"entities":[9],"with":[10,25],"extremely":[11],"small":[12],"genomes,":[13],"and":[14,63,93,98,117],"medicine,":[16],"pathogens,":[18],"represents":[19],"an":[20],"important":[21],"area":[22],"inquiry":[24],"significant":[26],"potential":[27,121],"for":[28,80,95],"improving":[29],"scientific":[30],"knowledge":[31],"both":[33],"domains.":[34],"One":[35],"the":[37,45,88,118,124],"most":[38],"fascinating":[39],"genetic":[40],"adaptations":[41],"is":[44],"ability":[46],"to":[47,73,87,111],"compress":[48],"their":[49],"own":[50],"genomes.":[51],"We":[52],"exposit":[53],"here":[54],"a":[55,68],"formal":[56],"model":[57],"gene":[59,78,100],"compression":[60,79,101],"its":[65],"properties":[66,76],"from":[67],"formal-language-theoretic":[69],"standpoint.":[70],"In":[71],"addition":[72],"enumerating":[74],"abstract":[75],"infinite":[81],"languages,":[82],"we":[83],"pay":[84],"particular":[85],"attention":[86],"case":[89],"finite":[91],"languages":[92],"algorithms":[94],"identifying,":[96],"classifying":[97],"quantifying":[99],"real":[103],"viruses.":[104],"Information":[105],"this":[107],"sort":[108],"has":[109],"applications":[110],"automated":[112],"classification":[113],"new":[115],"prediction":[119],"proto-oncogenes":[122],"human":[125],"genome.":[126]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
