{"id":"https://openalex.org/W2331754789","doi":"https://doi.org/10.1142/9789812702098_0008","title":"QUERYING A DATABASE OF REGULATORY ELEMENTS","display_name":"QUERYING A DATABASE OF REGULATORY ELEMENTS","publication_year":2005,"publication_date":"2005-05-01","ids":{"openalex":"https://openalex.org/W2331754789","doi":"https://doi.org/10.1142/9789812702098_0008","mag":"2331754789"},"language":"en","primary_location":{"id":"doi:10.1142/9789812702098_0008","is_oa":false,"landing_page_url":"https://doi.org/10.1142/9789812702098_0008","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics and Its Applications","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102211594","display_name":"Chengyong Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]},{"id":"https://openalex.org/I4210119046","display_name":"Zero to Three","ror":"https://ror.org/01qvk6016","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210119046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"CHENGYONG YANG","raw_affiliation_strings":["BioRG, School of Computer Science, Florida International University, Miami FL 33199, USA","BioRG, School of Computer Science, Florida International University, Miami FL 33199, USAAuthors Chengyong Yang and Erliang Zeng contributed equally to this work"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioRG, School of Computer Science, Florida International University, Miami FL 33199, USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"BioRG, School of Computer Science, Florida International University, Miami FL 33199, USAAuthors Chengyong Yang and Erliang Zeng contributed equally to this work","institution_ids":["https://openalex.org/I4210119046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062079290","display_name":"Erliang Zeng","orcid":"https://orcid.org/0000-0002-2891-6497"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]},{"id":"https://openalex.org/I4210119046","display_name":"Zero to Three","ror":"https://ror.org/01qvk6016","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210119046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"ERLIANG ZENG","raw_affiliation_strings":["BioRG, School of Computer Science, Florida International University, Miami FL 33199, USA","BioRG, School of Computer Science, Florida International University, Miami FL 33199, USAAuthors Chengyong Yang and Erliang Zeng contributed equally to this work"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioRG, School of Computer Science, Florida International University, Miami FL 33199, USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"BioRG, School of Computer Science, Florida International University, Miami FL 33199, USAAuthors Chengyong Yang and Erliang Zeng contributed equally to this work","institution_ids":["https://openalex.org/I4210119046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037360822","display_name":"Kalai Mathee","orcid":"https://orcid.org/0000-0003-4569-5419"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"KALAI MATHEE","raw_affiliation_strings":["Department of Biological Sciences, Florida International University, Miami FL 33199, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Florida International University, Miami FL 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068890173","display_name":"Giri Narasimhan","orcid":"https://orcid.org/0000-0003-0535-4871"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"GIRI NARASIMHAN","raw_affiliation_strings":["BioRG, School of Computer Science, Florida International University, Miami FL 33199, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioRG, School of Computer Science, Florida International University, Miami FL 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19945994,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"81","last_page":"92"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.18490000069141388,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.18490000069141388,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.671593427658081},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5185878276824951}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.671593427658081},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5185878276824951}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1142/9789812702098_0008","is_oa":false,"landing_page_url":"https://doi.org/10.1142/9789812702098_0008","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics and Its Applications","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.151.7417","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.151.7417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.fiu.edu/~ezeng001/publications/ICBA04.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.64.9383","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.64.9383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.fiu.edu/~giri/papers/ICBA04_YangZeng.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"In":[0],"this":[1,78],"paper,":[2],"we":[3,65],"present":[4],"a":[5,24,32,49,68],"new":[6],"approach":[7],"that":[8,17],"will":[9],"facilitate":[10],"the":[11,37,41,60,86],"process":[12],"of":[13,36,62,74],"drawing":[14],"meaningful":[15],"conclusions":[16],"are":[18],"likely":[19],"to":[20,23],"be":[21,28,83],"useful":[22],"biologist":[25,69],"who":[26],"may":[27],"interested":[29],"in":[30],"only":[31],"specific":[33],"functional":[34],"aspect":[35],"organism":[38],"(rather":[39],"than":[40],"entire":[42],"genome).":[43],"This":[44],"is":[45],"achieved":[46],"by":[47],"constructing":[48],"comprehensive":[50],"relational":[51],"database":[52,81],"and":[53],"an":[54],"intelligent,":[55],"userfriendly":[56],"query":[57],"system.":[58,79],"With":[59],"help":[61],"simple":[63],"examples,":[64],"show":[66],"how":[67],"with":[70],"no":[71],"prior":[72],"knowledge":[73],"databases":[75],"can":[76,82],"use":[77],"Our":[80],"queried":[84],"from":[85]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
