{"id":"https://openalex.org/W2089440068","doi":"https://doi.org/10.1137/s0036144502411986","title":"An Analytical Method for Multiclass Molecular Cancer Classification","display_name":"An Analytical Method for Multiclass Molecular Cancer Classification","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2089440068","doi":"https://doi.org/10.1137/s0036144502411986","mag":"2089440068"},"language":"en","primary_location":{"id":"doi:10.1137/s0036144502411986","is_oa":false,"landing_page_url":"https://doi.org/10.1137/s0036144502411986","pdf_url":null,"source":{"id":"https://openalex.org/S160107561","display_name":"SIAM Review","issn_l":"0036-1445","issn":["0036-1445","1095-7200"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075095085","display_name":"Ryan Rifkin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ryan Rifkin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014241799","display_name":"Sayan Mukherjee","orcid":"https://orcid.org/0000-0002-6715-3920"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sayan Mukherjee","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017114712","display_name":"Pablo Tamayo","orcid":"https://orcid.org/0000-0002-9360-4668"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pablo Tamayo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113516401","display_name":"Sridhar Ramaswamy","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sridhar Ramaswamy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077925107","display_name":"Chen\u2010Hsiang Yeang","orcid":"https://orcid.org/0000-0002-9224-5800"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen-Hsiang Yeang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111080114","display_name":"Michael Angelo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Angelo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066328638","display_name":"Michael Reich","orcid":"https://orcid.org/0000-0003-4735-5514"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Reich","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001833084","display_name":"Tomaso Poggio","orcid":"https://orcid.org/0000-0002-3944-0455"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tomaso Poggio","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020748592","display_name":"Eric S. Lander","orcid":"https://orcid.org/0000-0003-2662-4631"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric S. Lander","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001449157","display_name":"Todd R. Golub","orcid":"https://orcid.org/0000-0003-0113-2403"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Todd R. Golub","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5077622597","display_name":"Jill P. Mesirov","orcid":"https://orcid.org/0000-0002-9755-2818"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jill P. Mesirov","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8331,"has_fulltext":false,"cited_by_count":67,"citation_normalized_percentile":{"value":0.84737617,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"45","issue":"4","first_page":"706","last_page":"723"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9807000160217285,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiclass-classification","display_name":"Multiclass classification","score":0.8230185508728027},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.733780026435852},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7000075578689575},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5473378896713257},{"id":"https://openalex.org/keywords/binary-classification","display_name":"Binary classification","score":0.5155377388000488},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4737313985824585},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.44522824883461},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4418613910675049},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4322686195373535},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41566002368927},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4058506488800049},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3854946196079254},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2247152030467987},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1786545217037201},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1433180868625641}],"concepts":[{"id":"https://openalex.org/C123860398","wikidata":"https://www.wikidata.org/wiki/Q6934605","display_name":"Multiclass classification","level":3,"score":0.8230185508728027},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.733780026435852},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7000075578689575},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5473378896713257},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.5155377388000488},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4737313985824585},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.44522824883461},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4418613910675049},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4322686195373535},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41566002368927},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4058506488800049},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3854946196079254},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2247152030467987},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1786545217037201},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1433180868625641},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1137/s0036144502411986","is_oa":false,"landing_page_url":"https://doi.org/10.1137/s0036144502411986","pdf_url":null,"source":{"id":"https://openalex.org/S160107561","display_name":"SIAM Review","issn_l":"0036-1445","issn":["0036-1445","1095-7200"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Review","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.212.6185","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.212.6185","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.broadinstitute.org/mpr/publications/projects/Global_Cancer_Map/multiclass.siam_final_March_12_2003.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.329.7914","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.329.7914","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cbcl.mit.edu/projects/cbcl/publications/ps/siam_reviews.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.330.9434","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.330.9434","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cbcl.mit.edu/cbcl/people/sayan/webPub/siam_reviews.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.91.6241","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.91.6241","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cbcl.mit.edu/projects/cbcl/publications/ps/siam-review-2003.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6600000262260437}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W99903558","https://openalex.org/W1516680908","https://openalex.org/W1531648066","https://openalex.org/W1540371141","https://openalex.org/W1966045914","https://openalex.org/W1975846642","https://openalex.org/W1986280275","https://openalex.org/W1995945562","https://openalex.org/W2011815965","https://openalex.org/W2019575783","https://openalex.org/W2029441111","https://openalex.org/W2030165415","https://openalex.org/W2036910311","https://openalex.org/W2041071620","https://openalex.org/W2083774980","https://openalex.org/W2086789740","https://openalex.org/W2094613397","https://openalex.org/W2097839764","https://openalex.org/W2099841076","https://openalex.org/W2102794349","https://openalex.org/W2108728387","https://openalex.org/W2109363337","https://openalex.org/W2110652811","https://openalex.org/W2122599407","https://openalex.org/W2137476312","https://openalex.org/W2143426320","https://openalex.org/W2144894933","https://openalex.org/W2146194825","https://openalex.org/W2148603752","https://openalex.org/W2149846618","https://openalex.org/W2322002063","https://openalex.org/W2611104316","https://openalex.org/W3106889297","https://openalex.org/W4254721730","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2039745824","https://openalex.org/W3157224608","https://openalex.org/W2747895175","https://openalex.org/W2946583009","https://openalex.org/W4376528628","https://openalex.org/W2614669534","https://openalex.org/W2104406636","https://openalex.org/W2623163150","https://openalex.org/W2186666570","https://openalex.org/W2123014508"],"abstract_inverted_index":{"Modern":[0],"cancer":[1,43,169],"treatment":[2],"relies":[3],"upon":[4],"microscopic":[5],"tissue":[6],"examination":[7],"to":[8,12,40,103,185],"classify":[9],"tumors":[10],"according":[11],"anatomical":[13],"site":[14],"of":[15,106,118,124,147,176],"origin.":[16],"This":[17],"approach":[18],"is":[19,133,171],"effective":[20],"but":[21],"subjective":[22],"and":[23,29,50,75,173],"variable":[24],"even":[25],"among":[26],"experienced":[27],"clinicians":[28],"pathologists.":[30],"Recently,":[31],"DNA":[32,112],"microarray-generated":[33],"gene":[34,62,166],"expression":[35,63],"data":[36,114],"has":[37],"been":[38],"used":[39],"build":[41],"molecular":[42],"classifiers.":[44],"Previous":[45],"work":[46],"from":[47,115],"our":[48],"group":[49],"others":[51],"demonstrated":[52],"methods":[53],"for":[54,86,140],"solving":[55],"pairwise":[56],"classification":[57,66,131],"problems":[58],"using":[59,111],"such":[60,183],"global":[61],"patterns.":[64],"However,":[65],"across":[67],"multiple":[68,107],"primary":[69],"tumor":[70,120,128],"classes":[71],"poses":[72],"new":[73],"methodological":[74],"computational":[76,84],"challenges.":[77],"In":[78,143],"this":[79,101,160],"paper":[80,161],"we":[81],"describe":[82],"a":[83,116,144],"methodology":[85,102,157],"multiclass":[87,168],"prediction":[88],"that":[89,164],"combines":[90],"class-specific":[91],"(one":[92],"vs.":[93],"all)":[94],"binary":[95],"support":[96],"vector":[97],"machines.":[98],"We":[99],"apply":[100],"the":[104,125,137,148,151,177],"diagnosis":[105,170],"common":[108,127],"adult":[109],"malignancies":[110],"microarray":[113],"collection":[117],"198":[119],"samples,":[121],"spanning":[122],"14":[123],"most":[126],"types.":[129],"Overall":[130],"accuracy":[132,139],"78%,":[134],"far":[135],"exceeding":[136],"expected":[138],"random":[141],"classification.":[142],"large":[145],"subset":[146],"samples":[149],"(80%),":[150],"algorithm":[152],"attains":[153],"90%":[154],"accuracy.":[155],"The":[156],"described":[158],"in":[159,181],"both":[162],"demonstrates":[163],"accurate":[165],"expression-based":[167],"possible":[172],"highlights":[174],"some":[175],"analytic":[178],"challenges":[179],"inherent":[180],"applying":[182],"strategies":[184],"biomedical":[186],"research.":[187]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
