{"id":"https://openalex.org/W813277965","doi":"https://doi.org/10.1137/140971762","title":"Bayesian Mixed Effect Atlas Estimation with a Diffeomorphic Deformation Model","display_name":"Bayesian Mixed Effect Atlas Estimation with a Diffeomorphic Deformation Model","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W813277965","doi":"https://doi.org/10.1137/140971762","mag":"813277965"},"language":"en","primary_location":{"id":"doi:10.1137/140971762","is_oa":false,"landing_page_url":"https://doi.org/10.1137/140971762","pdf_url":null,"source":{"id":"https://openalex.org/S152600803","display_name":"SIAM Journal on Imaging Sciences","issn_l":"1936-4954","issn":["1936-4954"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Journal on Imaging Sciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/hal-01246570","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031106777","display_name":"St\u00e9phanie Allassonni\u00e8re","orcid":"https://orcid.org/0000-0002-5692-4945"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Allassonni\u00e8re","raw_affiliation_strings":["X - \u00c9cole polytechnique (\u00c9cole polytechnique, 91128 Palaiseau Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"X - \u00c9cole polytechnique (\u00c9cole polytechnique, 91128 Palaiseau Cedex - France)","institution_ids":["https://openalex.org/I142476485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080254367","display_name":"Stanley Durrleman","orcid":"https://orcid.org/0000-0002-9450-6920"},"institutions":[{"id":"https://openalex.org/I4210086194","display_name":"Institut des Sciences Mol\u00e9culaires","ror":"https://ror.org/00r8jkk54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210086194","https://openalex.org/I4210128300","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210152724","display_name":"Institut du Cerveau","ror":"https://ror.org/050gn5214","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210152724"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Durrleman","raw_affiliation_strings":["ARAMIS - Algorithms, models and methods for images and signals of the human brain = Algorithmes, mod\u00e8les et m\u00e9thodes pour les images et les signaux du cerveau humain [ICM Paris] (H\u00f4pital de la Piti\u00e9-Salp\u00eatri\u00e8re Batiment ICM 47 boulevard de l'hopital 75013 Paris - France)","ICM - Institut du Cerveau = Paris Brain Institute (47-83 Boulevard de l'H\u00f4pital 75651 Paris Cedex 13 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ARAMIS - Algorithms, models and methods for images and signals of the human brain = Algorithmes, mod\u00e8les et m\u00e9thodes pour les images et les signaux du cerveau humain [ICM Paris] (H\u00f4pital de la Piti\u00e9-Salp\u00eatri\u00e8re Batiment ICM 47 boulevard de l'hopital 75013 Paris - France)","institution_ids":["https://openalex.org/I4210152724"]},{"raw_affiliation_string":"ICM - Institut du Cerveau = Paris Brain Institute (47-83 Boulevard de l'H\u00f4pital 75651 Paris Cedex 13 - France)","institution_ids":["https://openalex.org/I4210086194","https://openalex.org/I4210152724"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088013122","display_name":"Estelle Kuhn","orcid":"https://orcid.org/0000-0002-1236-8190"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. Kuhn","raw_affiliation_strings":["MIA-JOUY - Unit\u00e9 de biom\u00e9trie et intelligence artificielle de Jouy (78352 Jouy-en-Josas - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIA-JOUY - Unit\u00e9 de biom\u00e9trie et intelligence artificielle de Jouy (78352 Jouy-en-Josas - France)","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.9842,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.92845847,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"8","issue":"3","first_page":"1367","last_page":"1395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.8265401124954224},{"id":"https://openalex.org/keywords/diffeomorphism","display_name":"Diffeomorphism","score":0.6580639481544495},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5768916606903076},{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.4901164472103119},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37124505639076233},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.36609163880348206},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.3235389292240143},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3168533742427826},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3104170858860016},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10998654365539551},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.09023353457450867},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.06542801856994629}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.8265401124954224},{"id":"https://openalex.org/C47556283","wikidata":"https://www.wikidata.org/wiki/Q1058314","display_name":"Diffeomorphism","level":2,"score":0.6580639481544495},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5768916606903076},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.4901164472103119},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37124505639076233},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.36609163880348206},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.3235389292240143},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3168533742427826},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3104170858860016},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10998654365539551},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.09023353457450867},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.06542801856994629},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1137/140971762","is_oa":false,"landing_page_url":"https://doi.org/10.1137/140971762","pdf_url":null,"source":{"id":"https://openalex.org/S152600803","display_name":"SIAM Journal on Imaging Sciences","issn_l":"1936-4954","issn":["1936-4954"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Journal on Imaging Sciences","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-01246570v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01246570","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"SIAM Journal on Imaging Sciences, 2015, 8 (3), pp.29. ⟨10.1137/140971762⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-02801668v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02801668","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"[Technical Report] R2014-2, Inra. 2014","raw_type":"info:eu-repo/semantics/report"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01246570v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01246570","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"SIAM Journal on Imaging Sciences, 2015, 8 (3), pp.29. ⟨10.1137/140971762⟩","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W44831881","https://openalex.org/W102079220","https://openalex.org/W1490552200","https://openalex.org/W1494041778","https://openalex.org/W1503893179","https://openalex.org/W1507084921","https://openalex.org/W1512080959","https://openalex.org/W1573041381","https://openalex.org/W1596437242","https://openalex.org/W1951747706","https://openalex.org/W1969002377","https://openalex.org/W1986280275","https://openalex.org/W1994954091","https://openalex.org/W2003434579","https://openalex.org/W2006302620","https://openalex.org/W2020608997","https://openalex.org/W2030409097","https://openalex.org/W2041398617","https://openalex.org/W2043722695","https://openalex.org/W2047939101","https://openalex.org/W2049114803","https://openalex.org/W2055742299","https://openalex.org/W2062483720","https://openalex.org/W2066193516","https://openalex.org/W2076114154","https://openalex.org/W2081834074","https://openalex.org/W2100556411","https://openalex.org/W2108198948","https://openalex.org/W2113267567","https://openalex.org/W2115245436","https://openalex.org/W2116532199","https://openalex.org/W2121549990","https://openalex.org/W2133555934","https://openalex.org/W2153358953","https://openalex.org/W2158167845","https://openalex.org/W2167098252","https://openalex.org/W2170167891","https://openalex.org/W2175579535","https://openalex.org/W2284266414"],"related_works":["https://openalex.org/W4386794506","https://openalex.org/W2962984814","https://openalex.org/W4293508317","https://openalex.org/W3104281043","https://openalex.org/W2075372083","https://openalex.org/W2891397405","https://openalex.org/W2462155254","https://openalex.org/W4212817163","https://openalex.org/W2011187995","https://openalex.org/W3217798761"],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2],"we":[3],"introduce":[4],"a":[5,25,57,74,102],"diffeomorphic":[6],"constraint":[7,104],"on":[8,24,120,127,132],"the":[9,13,49,63,68,78,82,87,99,121],"deformations":[10],"considered":[11],"in":[12],"deformable":[14],"Bayesian":[15],"mixed":[16],"effect":[17],"template":[18,58],"model.":[19],"Our":[20],"approach":[21],"is":[22,31,84],"built":[23],"generic":[26],"group":[27],"of":[28,37,52,62,77,98,110,129],"diffeomorphisms,":[29],"which":[30,66],"parameterized":[32],"by":[33],"an":[34,96,107],"arbitrary":[35],"set":[36],"control":[38,53,111],"point":[39],"positions":[40,51],"and":[41,60,131],"momentum":[42],"vectors.":[43],"This":[44],"enables":[45],"us":[46],"to":[47,72,105],"estimate":[48],"optimal":[50,108],"points":[54,112],"together":[55],"with":[56,113],"image":[59],"parameters":[61],"deformation":[64],"distribution":[65],"compose":[67],"atlas.":[69],"We":[70,93],"propose":[71,94],"use":[73],"stochastic":[75],"version":[76],"expectation-maximization":[79],"algorithm":[80],"where":[81],"simulation":[83],"performed":[85],"using":[86],"anisotropic":[88],"Metropolis":[89],"adjusted":[90],"Langevin":[91],"algorithm.":[92],"also":[95],"extension":[97],"model":[100],"including":[101],"sparsity":[103],"select":[106],"number":[109],"relevant":[114],"positions.":[115],"Experiments":[116],"are":[117],"carried":[118],"out":[119],"United":[122],"States":[123],"Postal":[124],"Service":[125],"database,":[126],"mandibles":[128],"mice,":[130],"three-dimensional":[133],"murine":[134],"dendrite":[135],"spine":[136],"images.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}