{"id":"https://openalex.org/W2066177447","doi":"https://doi.org/10.1137/090774288","title":"Fast Analytical Methods for Macroscopic Electrostatic Models in Biomolecular Simulations","display_name":"Fast Analytical Methods for Macroscopic Electrostatic Models in Biomolecular Simulations","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2066177447","doi":"https://doi.org/10.1137/090774288","mag":"2066177447","pmid":"https://pubmed.ncbi.nlm.nih.gov/23745011"},"language":"en","primary_location":{"id":"doi:10.1137/090774288","is_oa":false,"landing_page_url":"https://doi.org/10.1137/090774288","pdf_url":null,"source":{"id":"https://openalex.org/S160107561","display_name":"SIAM Review","issn_l":"0036-1445","issn":["0036-1445","1095-7200"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084673397","display_name":"Zhenli Xu","orcid":"https://orcid.org/0000-0001-7645-4998"},"institutions":[{"id":"https://openalex.org/I4210158445","display_name":"Institute of Natural Science","ror":"https://ror.org/004tze884","country_code":"KP","type":"education","lineage":["https://openalex.org/I4210158445"]}],"countries":["KP"],"is_corresponding":false,"raw_author_name":"Zhenli Xu","raw_affiliation_strings":["Department of Mathematics and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China, and Department of Mathematics and Statistics, University of North Carolina, Charlotte, NC 28223 ( xuzl@sjtu.edu.cn )","xuzl@sjtu.edu.cn#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China, and Department of Mathematics and Statistics, University of North Carolina, Charlotte, NC 28223 ( xuzl@sjtu.edu.cn )","institution_ids":["https://openalex.org/I4210158445"]},{"raw_affiliation_string":"xuzl@sjtu.edu.cn#TAB#","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044102523","display_name":"Wei Cai","orcid":"https://orcid.org/0000-0002-7622-4532"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wei Cai","raw_affiliation_strings":["[email\u00a0protected]#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"[email\u00a0protected]#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.129,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.87225384,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"53","issue":"4","first_page":"683","last_page":"720"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/solvation","display_name":"Solvation","score":0.7641473412513733},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.6666572093963623},{"id":"https://openalex.org/keywords/poisson\u2013boltzmann-equation","display_name":"Poisson\u2013Boltzmann equation","score":0.6200519800186157},{"id":"https://openalex.org/keywords/electrostatics","display_name":"Electrostatics","score":0.6115133762359619},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4983360767364502},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.41771191358566284},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3283752202987671},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.14956969022750854},{"id":"https://openalex.org/keywords/ion","display_name":"Ion","score":0.10236310958862305},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.07680487632751465}],"concepts":[{"id":"https://openalex.org/C148093993","wikidata":"https://www.wikidata.org/wiki/Q739398","display_name":"Solvation","level":3,"score":0.7641473412513733},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.6666572093963623},{"id":"https://openalex.org/C109757611","wikidata":"https://www.wikidata.org/wiki/Q901009","display_name":"Poisson\u2013Boltzmann equation","level":3,"score":0.6200519800186157},{"id":"https://openalex.org/C117626034","wikidata":"https://www.wikidata.org/wiki/Q26336","display_name":"Electrostatics","level":2,"score":0.6115133762359619},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4983360767364502},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.41771191358566284},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3283752202987671},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.14956969022750854},{"id":"https://openalex.org/C145148216","wikidata":"https://www.wikidata.org/wiki/Q36496","display_name":"Ion","level":2,"score":0.10236310958862305},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.07680487632751465}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1137/090774288","is_oa":false,"landing_page_url":"https://doi.org/10.1137/090774288","pdf_url":null,"source":{"id":"https://openalex.org/S160107561","display_name":"SIAM Review","issn_l":"0036-1445","issn":["0036-1445","1095-7200"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Review","raw_type":"journal-article"},{"id":"pmid:23745011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23745011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM review. Society for Industrial and Applied Mathematics","raw_type":null},{"id":"pmh:oai:europepmc.org:2670728","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3671632","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8199999928474426,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":231,"referenced_works":["https://openalex.org/W27727037","https://openalex.org/W560693694","https://openalex.org/W561686463","https://openalex.org/W650122443","https://openalex.org/W1434764526","https://openalex.org/W1484547674","https://openalex.org/W1495359753","https://openalex.org/W1521042556","https://openalex.org/W1522757772","https://openalex.org/W1566694705","https://openalex.org/W1594483434","https://openalex.org/W1612521140","https://openalex.org/W1615951207","https://openalex.org/W1746301200","https://openalex.org/W1966078827","https://openalex.org/W1969296884","https://openalex.org/W1969674470","https://openalex.org/W1970420158","https://openalex.org/W1971765381","https://openalex.org/W1971765978","https://openalex.org/W1972197313","https://openalex.org/W1973060079","https://openalex.org/W1973819621","https://openalex.org/W1974045947","https://openalex.org/W1974167806","https://openalex.org/W1974507074","https://openalex.org/W1978291408","https://openalex.org/W1978853657","https://openalex.org/W1978976525","https://openalex.org/W1979837325","https://openalex.org/W1980933072","https://openalex.org/W1981119100","https://openalex.org/W1981385422","https://openalex.org/W1981484079","https://openalex.org/W1983150892","https://openalex.org/W1984015691","https://openalex.org/W1985666193","https://openalex.org/W1985783365","https://openalex.org/W1987729396","https://openalex.org/W1988576626","https://openalex.org/W1989311858","https://openalex.org/W1990265247","https://openalex.org/W1991939674","https://openalex.org/W1992118390","https://openalex.org/W1992465972","https://openalex.org/W1992704537","https://openalex.org/W1995994436","https://openalex.org/W1996160600","https://openalex.org/W1996230008","https://openalex.org/W1996404652","https://openalex.org/W1997240546","https://openalex.org/W1997444623","https://openalex.org/W1997596874","https://openalex.org/W2000565132","https://openalex.org/W2001676859","https://openalex.org/W2001900040","https://openalex.org/W2002484456","https://openalex.org/W2002604405","https://openalex.org/W2002659345","https://openalex.org/W2003525755","https://openalex.org/W2003626295","https://openalex.org/W2003869713","https://openalex.org/W2004303971","https://openalex.org/W2004360551","https://openalex.org/W2008246496","https://openalex.org/W2008873311","https://openalex.org/W2009949723","https://openalex.org/W2010383546","https://openalex.org/W2011470242","https://openalex.org/W2012551774","https://openalex.org/W2012707864","https://openalex.org/W2015171723","https://openalex.org/W2018379667","https://openalex.org/W2019750909","https://openalex.org/W2020561870","https://openalex.org/W2021534482","https://openalex.org/W2021747225","https://openalex.org/W2022033262","https://openalex.org/W2022211519","https://openalex.org/W2022492426","https://openalex.org/W2023144302","https://openalex.org/W2023799108","https://openalex.org/W2025694445","https://openalex.org/W2025880126","https://openalex.org/W2026067076","https://openalex.org/W2027154929","https://openalex.org/W2027369153","https://openalex.org/W2027408247","https://openalex.org/W2027638447","https://openalex.org/W2028031397","https://openalex.org/W2028629130","https://openalex.org/W2028694154","https://openalex.org/W2029582401","https://openalex.org/W2029788853","https://openalex.org/W2030199904","https://openalex.org/W2030407582","https://openalex.org/W2030841140","https://openalex.org/W2031166494","https://openalex.org/W2031305384","https://openalex.org/W2032231305","https://openalex.org/W2032829851","https://openalex.org/W2032953336","https://openalex.org/W2034303759","https://openalex.org/W2034939993","https://openalex.org/W2035046825","https://openalex.org/W2035687084","https://openalex.org/W2036837476","https://openalex.org/W2037879531","https://openalex.org/W2038227682","https://openalex.org/W2039665613","https://openalex.org/W2039740672","https://openalex.org/W2041834854","https://openalex.org/W2047730466","https://openalex.org/W2050397044","https://openalex.org/W2051419785","https://openalex.org/W2053085259","https://openalex.org/W2053843075","https://openalex.org/W2054557822","https://openalex.org/W2054881399","https://openalex.org/W2055430133","https://openalex.org/W2056940848","https://openalex.org/W2057128942","https://openalex.org/W2058052041","https://openalex.org/W2058287541","https://openalex.org/W2060304556","https://openalex.org/W2060410460","https://openalex.org/W2060672646","https://openalex.org/W2061259478","https://openalex.org/W2062224822","https://openalex.org/W2064747164","https://openalex.org/W2065078143","https://openalex.org/W2065101872","https://openalex.org/W2065405988","https://openalex.org/W2065885143","https://openalex.org/W2066455419","https://openalex.org/W2067104136","https://openalex.org/W2067174909","https://openalex.org/W2067452867","https://openalex.org/W2068019452","https://openalex.org/W2069002738","https://openalex.org/W2069883496","https://openalex.org/W2071250088","https://openalex.org/W2072419120","https://openalex.org/W2073976880","https://openalex.org/W2075502858","https://openalex.org/W2076057716","https://openalex.org/W2076480419","https://openalex.org/W2078382138","https://openalex.org/W2078749611","https://openalex.org/W2079402514","https://openalex.org/W2081051346","https://openalex.org/W2081588627","https://openalex.org/W2082029567","https://openalex.org/W2083206954","https://openalex.org/W2083474267","https://openalex.org/W2083900375","https://openalex.org/W2085561931","https://openalex.org/W2087179087","https://openalex.org/W2088908206","https://openalex.org/W2089258285","https://openalex.org/W2092195398","https://openalex.org/W2092267259","https://openalex.org/W2092549156","https://openalex.org/W2093102876","https://openalex.org/W2094879588","https://openalex.org/W2097636474","https://openalex.org/W2098575496","https://openalex.org/W2099456305","https://openalex.org/W2102514286","https://openalex.org/W2102640727","https://openalex.org/W2103734924","https://openalex.org/W2107317356","https://openalex.org/W2108695135","https://openalex.org/W2110670340","https://openalex.org/W2113443707","https://openalex.org/W2115678237","https://openalex.org/W2117092343","https://openalex.org/W2117904766","https://openalex.org/W2117926105","https://openalex.org/W2118681534","https://openalex.org/W2121881427","https://openalex.org/W2123382909","https://openalex.org/W2123806585","https://openalex.org/W2125439985","https://openalex.org/W2125551373","https://openalex.org/W2126326359","https://openalex.org/W2128276019","https://openalex.org/W2133543883","https://openalex.org/W2134544924","https://openalex.org/W2135175285","https://openalex.org/W2137783128","https://openalex.org/W2138008062","https://openalex.org/W2138199172","https://openalex.org/W2138581686","https://openalex.org/W2138818954","https://openalex.org/W2139741484","https://openalex.org/W2140319432","https://openalex.org/W2141160743","https://openalex.org/W2143642421","https://openalex.org/W2144408491","https://openalex.org/W2147064885","https://openalex.org/W2147970410","https://openalex.org/W2150785142","https://openalex.org/W2153628295","https://openalex.org/W2155858732","https://openalex.org/W2158735959","https://openalex.org/W2162166182","https://openalex.org/W2168796481","https://openalex.org/W2171268876","https://openalex.org/W2171891719","https://openalex.org/W2285424332","https://openalex.org/W2313299119","https://openalex.org/W2326203395","https://openalex.org/W2332112743","https://openalex.org/W2410163017","https://openalex.org/W2503062299","https://openalex.org/W2596685564","https://openalex.org/W2614767951","https://openalex.org/W2615109447","https://openalex.org/W2801179766","https://openalex.org/W2917183431","https://openalex.org/W2992693730","https://openalex.org/W3021550876","https://openalex.org/W3038515387","https://openalex.org/W3039083618","https://openalex.org/W3102478570","https://openalex.org/W4212841973","https://openalex.org/W4230466483","https://openalex.org/W4238366041","https://openalex.org/W4243417288","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W46963615","https://openalex.org/W2031305384","https://openalex.org/W623440411","https://openalex.org/W2021534482","https://openalex.org/W2070874699","https://openalex.org/W2106115249","https://openalex.org/W1487420490","https://openalex.org/W4231070746","https://openalex.org/W2989609512","https://openalex.org/W1990141041"],"abstract_inverted_index":{"We":[0],"review":[1,61],"recent":[2],"developments":[3],"of":[4],"fast":[5],"analytical":[6,32],"methods":[7],"for":[8,24,34,43],"macroscopic":[9],"electrostatic":[10,25],"calculations":[11],"in":[12],"biological":[13],"applications,":[14],"including":[15],"the":[16,20,39,49,57,66],"Poisson-Boltzmann":[17],"(PB)":[18],"and":[19,47],"generalized":[21,50],"Born":[22,51],"models":[23],"solvation":[26,36],"energy.":[27],"The":[28],"focus":[29],"is":[30],"on":[31,65],"approaches":[33],"hybrid":[35],"models,":[37],"especially":[38],"image":[40],"charge":[41],"method":[42],"a":[44],"spherical":[45],"cavity,":[46],"also":[48],"theory":[52],"as":[53],"an":[54],"approximation":[55],"to":[56],"PB":[58],"model.":[59],"This":[60],"places":[62],"much":[63],"emphasis":[64],"mathematical":[67],"details":[68],"behind":[69],"these":[70],"methods.":[71]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":7}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
