{"id":"https://openalex.org/W2010625700","doi":"https://doi.org/10.1137/050630064","title":"Macroscopic Dynamics of Complex Metastable Systems: Theory, Algorithms, and Application to B-DNA","display_name":"Macroscopic Dynamics of Complex Metastable Systems: Theory, Algorithms, and Application to B-DNA","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2010625700","doi":"https://doi.org/10.1137/050630064","mag":"2010625700"},"language":"en","primary_location":{"id":"doi:10.1137/050630064","is_oa":false,"landing_page_url":"https://doi.org/10.1137/050630064","pdf_url":null,"source":{"id":"https://openalex.org/S161160597","display_name":"SIAM Journal on Applied Dynamical Systems","issn_l":"1536-0040","issn":["1536-0040"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Journal on Applied Dynamical Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/160772","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088102530","display_name":"Illia Horenko","orcid":"https://orcid.org/0000-0002-4964-8014"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Illia Horenko","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081376713","display_name":"Evelyn Dittmer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Evelyn Dittmer","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004287173","display_name":"Filip Lanka\u0161","orcid":"https://orcid.org/0000-0003-1154-3855"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Filip Lankas","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065904104","display_name":"John H. Maddocks","orcid":"https://orcid.org/0000-0003-1127-8481"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Maddocks","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089947872","display_name":"Philipp Metzner","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Philipp Metzner","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5108759740","display_name":"Christof Sch\u00fctte","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christof Sch\u00fctte","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5088102530"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4733,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.64520058,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":"2","first_page":"532","last_page":"560"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13187","display_name":"Diffusion and Search Dynamics","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metastability","display_name":"Metastability","score":0.6504518985748291},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6373868584632874},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6047404408454895},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.5874268412590027},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5450364947319031},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5324089527130127},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.49472519755363464},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.47108185291290283},{"id":"https://openalex.org/keywords/transfer-operator","display_name":"Transfer operator","score":0.46542900800704956},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4550096392631531},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3811822533607483},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24226021766662598},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2040923833847046},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16571098566055298},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16025936603546143},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.10635611414909363}],"concepts":[{"id":"https://openalex.org/C89464430","wikidata":"https://www.wikidata.org/wiki/Q849516","display_name":"Metastability","level":2,"score":0.6504518985748291},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6373868584632874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6047404408454895},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.5874268412590027},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5450364947319031},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5324089527130127},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.49472519755363464},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.47108185291290283},{"id":"https://openalex.org/C2777952282","wikidata":"https://www.wikidata.org/wiki/Q3354606","display_name":"Transfer operator","level":2,"score":0.46542900800704956},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4550096392631531},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3811822533607483},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24226021766662598},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2040923833847046},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16571098566055298},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16025936603546143},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.10635611414909363},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1137/050630064","is_oa":false,"landing_page_url":"https://doi.org/10.1137/050630064","pdf_url":null,"source":{"id":"https://openalex.org/S161160597","display_name":"SIAM Journal on Applied Dynamical Systems","issn_l":"1536-0040","issn":["1536-0040"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SIAM Journal on Applied Dynamical Systems","raw_type":"journal-article"},{"id":"pmh:oai:infoscience.epfl.ch:160772","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/160772","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:infoscience.tind.io:160772","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/61184","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"}],"best_oa_location":{"id":"pmh:oai:infoscience.epfl.ch:160772","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/160772","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1988376519","https://openalex.org/W1991133427","https://openalex.org/W2007969238","https://openalex.org/W2012029966","https://openalex.org/W2017485163","https://openalex.org/W2019266755","https://openalex.org/W2025335914","https://openalex.org/W2040681130","https://openalex.org/W2045068339","https://openalex.org/W2046290306","https://openalex.org/W2059816461","https://openalex.org/W2067172786","https://openalex.org/W2069288299","https://openalex.org/W2070676247","https://openalex.org/W2074388175","https://openalex.org/W2089022222","https://openalex.org/W2096125044","https://openalex.org/W2115961344","https://openalex.org/W2125838338","https://openalex.org/W2132589721","https://openalex.org/W2134597713","https://openalex.org/W2147848673","https://openalex.org/W2150945052","https://openalex.org/W2153701468","https://openalex.org/W2164227042"],"related_works":["https://openalex.org/W4307107610","https://openalex.org/W3213627526","https://openalex.org/W4226159838","https://openalex.org/W3138976155","https://openalex.org/W1992748572","https://openalex.org/W2082939555","https://openalex.org/W2088012056","https://openalex.org/W2790243943","https://openalex.org/W2934478469","https://openalex.org/W2039520580"],"abstract_inverted_index":{"This":[0],"article":[1],"is":[2],"a":[3,50,73,79],"survey":[4],"of":[5,9,18,25,49,60,63,66,78],"the":[6,10,15,23,38,42,46],"present":[7],"state":[8],"transfer":[11],"operator":[12],"approach":[13],"to":[14,45,72],"effective":[16],"dynamics":[17,48,76],"metastable":[19],"complex":[20],"systems,":[21],"and":[22,34,41],"variety":[24],"algorithms":[26],"associated":[27],"with":[28],"it.":[29],"We":[30],"introduce":[31],"new":[32],"methods,":[33],"we":[35],"emphasize":[36],"both":[37],"conceptional":[39],"foundations":[40],"concrete":[43],"application":[44,71],"conformation":[47],"biomolecular":[51],"system.":[52],"The":[53],"algorithmic":[54],"aspects":[55],"are":[56],"illustrated":[57],"by":[58],"means":[59],"several":[61],"examples":[62],"various":[64],"degrees":[65],"complexity,":[67],"culminating":[68],"in":[69],"their":[70],"full-scale":[74],"molecular":[75],"simulation":[77],"B-DNA":[80],"oligomer.":[81]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
