{"id":"https://openalex.org/W2040322522","doi":"https://doi.org/10.1137/040603255","title":"An Explicit Spatial Model of Yeast Microcolony Growth","display_name":"An Explicit Spatial Model of Yeast Microcolony Growth","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2040322522","doi":"https://doi.org/10.1137/040603255","mag":"2040322522"},"language":"en","primary_location":{"id":"doi:10.1137/040603255","is_oa":false,"landing_page_url":"https://doi.org/10.1137/040603255","pdf_url":null,"source":{"id":"https://openalex.org/S4357572","display_name":"Multiscale Modeling and Simulation","issn_l":"1540-3459","issn":["1540-3459","1540-3467"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Multiscale Modeling &amp; Simulation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010315204","display_name":"Henrik J\u00f6nsson","orcid":"https://orcid.org/0000-0003-2340-588X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Henrik J\u00f6nsson","raw_affiliation_strings":["Computational Biology and Biological Physics"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Biological Physics","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018571414","display_name":"Andre Levchenko","orcid":"https://orcid.org/0000-0001-6262-1222"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andre Levchenko","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010315204"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2461,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.54221831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"3","issue":"2","first_page":"346","last_page":"361"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.7813433408737183},{"id":"https://openalex.org/keywords/foraging","display_name":"Foraging","score":0.7043551802635193},{"id":"https://openalex.org/keywords/division","display_name":"Division (mathematics)","score":0.6046620011329651},{"id":"https://openalex.org/keywords/cell-division","display_name":"Cell division","score":0.5515900254249573},{"id":"https://openalex.org/keywords/growth-model","display_name":"Growth model","score":0.542792022228241},{"id":"https://openalex.org/keywords/cell-growth","display_name":"Cell growth","score":0.5119267702102661},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4951235353946686},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48640015721321106},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.45932289958000183},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4492432773113251},{"id":"https://openalex.org/keywords/polar","display_name":"Polar","score":0.43726351857185364},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.265167236328125},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21671506762504578},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19929978251457214},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16846609115600586}],"concepts":[{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.7813433408737183},{"id":"https://openalex.org/C165287380","wikidata":"https://www.wikidata.org/wiki/Q2916569","display_name":"Foraging","level":2,"score":0.7043551802635193},{"id":"https://openalex.org/C60798267","wikidata":"https://www.wikidata.org/wiki/Q1226939","display_name":"Division (mathematics)","level":2,"score":0.6046620011329651},{"id":"https://openalex.org/C85813293","wikidata":"https://www.wikidata.org/wiki/Q188909","display_name":"Cell division","level":3,"score":0.5515900254249573},{"id":"https://openalex.org/C2983335520","wikidata":"https://www.wikidata.org/wiki/Q47537570","display_name":"Growth model","level":2,"score":0.542792022228241},{"id":"https://openalex.org/C62112901","wikidata":"https://www.wikidata.org/wiki/Q189159","display_name":"Cell growth","level":2,"score":0.5119267702102661},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4951235353946686},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48640015721321106},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.45932289958000183},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4492432773113251},{"id":"https://openalex.org/C29705727","wikidata":"https://www.wikidata.org/wiki/Q294562","display_name":"Polar","level":2,"score":0.43726351857185364},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.265167236328125},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21671506762504578},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19929978251457214},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16846609115600586},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1137/040603255","is_oa":false,"landing_page_url":"https://doi.org/10.1137/040603255","pdf_url":null,"source":{"id":"https://openalex.org/S4357572","display_name":"Multiscale Modeling and Simulation","issn_l":"1540-3459","issn":["1540-3459","1540-3467"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320508","host_organization_name":"Society for Industrial and Applied Mathematics","host_organization_lineage":["https://openalex.org/P4310320508"],"host_organization_lineage_names":["Society for Industrial and Applied Mathematics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Multiscale Modeling &amp; Simulation","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.212.6430","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.212.6430","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cbbp.thep.lu.se/pub/Preprints/04/lu_tp_04_06.pdf","raw_type":"text"},{"id":"pmh:oai:lup.lub.lu.se:2fb238ef-ad35-4eec-9baa-d104e77d101b","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/248893","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1540-3459","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1567722565","https://openalex.org/W1590458072","https://openalex.org/W1837307608","https://openalex.org/W1910142428","https://openalex.org/W1942756820","https://openalex.org/W1963945069","https://openalex.org/W2018932246","https://openalex.org/W2028487872","https://openalex.org/W2029536789","https://openalex.org/W2032674459","https://openalex.org/W2054164850","https://openalex.org/W2060006253","https://openalex.org/W2080486252","https://openalex.org/W2100866112","https://openalex.org/W2109449816","https://openalex.org/W2117954597","https://openalex.org/W2119571991","https://openalex.org/W2123828256","https://openalex.org/W2128104520","https://openalex.org/W2148226318","https://openalex.org/W2163811015","https://openalex.org/W2981264952"],"related_works":["https://openalex.org/W2083693850","https://openalex.org/W2900279237","https://openalex.org/W209776223","https://openalex.org/W2949332337","https://openalex.org/W2591612535","https://openalex.org/W2003217768","https://openalex.org/W2009668940","https://openalex.org/W3044410178","https://openalex.org/W2164763613","https://openalex.org/W4280493527"],"abstract_inverted_index":{"Here":[0],"we":[1],"present":[2],"a":[3,10,28,57],"single-cell-based":[4],"model":[5],"of":[6,18,56],"cell-cell":[7],"interactions":[8],"in":[9],"growing":[11],"yeast":[12],"colony.":[13,58],"We":[14,32],"examine":[15],"the":[16,22,35,48,53],"influence":[17],"multiple":[19],"factors":[20,51],"on":[21],"colony":[23],"morphology":[24],"and":[25],"switch":[26],"to":[27],"foraging":[29],"growth":[30,45],"behavior.":[31],"find":[33],"that":[34],"cell-growth":[36],"inhibition":[37],"by":[38],"neighboring":[39],"cells":[40],"along":[41],"with":[42],"polar":[43],"division":[44],"patterns":[46],"are":[47],"most":[49],"significant":[50],"driving":[52],"exploratory":[54],"behavior":[55]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
