{"id":"https://openalex.org/W2109857877","doi":"https://doi.org/10.1136/jamia.2001.0080512","title":"UMLS Concept Indexing for Production Databases: A Feasibility Study","display_name":"UMLS Concept Indexing for Production Databases: A Feasibility Study","publication_year":2001,"publication_date":"2001-09-01","ids":{"openalex":"https://openalex.org/W2109857877","doi":"https://doi.org/10.1136/jamia.2001.0080512","mag":"2109857877","pmid":"https://pubmed.ncbi.nlm.nih.gov/11522772"},"language":"en","primary_location":{"id":"doi:10.1136/jamia.2001.0080512","is_oa":true,"landing_page_url":"https://doi.org/10.1136/jamia.2001.0080512","pdf_url":"https://academic.oup.com/jamia/article-pdf/8/5/512/2384902/8-5-512.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"letter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/8/5/512/2384902/8-5-512.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112084624","display_name":"Furman S. McDonald","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"F. S. McDonald","raw_affiliation_strings":["Affiliation of the authors: Mayo Clinic, Rochester, Minnesota"],"affiliations":[{"raw_affiliation_string":"Affiliation of the authors: Mayo Clinic, Rochester, Minnesota","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070359287","display_name":"Peter L. Elkin","orcid":"https://orcid.org/0000-0001-9616-6811"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. L. Elkin","raw_affiliation_strings":["Affiliation of the authors: Mayo Clinic, Rochester, Minnesota"],"affiliations":[{"raw_affiliation_string":"Affiliation of the authors: Mayo Clinic, Rochester, Minnesota","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5112084624"],"corresponding_institution_ids":["https://openalex.org/I1330342723"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.24420984,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.5159021,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"8","issue":"5","first_page":"512","last_page":"514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.916700005531311,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.7699869871139526},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6627404093742371},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.635221540927887},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.617445707321167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5985878705978394},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5687999129295349},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.528947114944458},{"id":"https://openalex.org/keywords/test","display_name":"Test (biology)","score":0.4957471787929535},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4942221939563751},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4765884578227997},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.448444664478302},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38889408111572266},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3707349896430969},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09278064966201782}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.7699869871139526},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6627404093742371},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.635221540927887},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.617445707321167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5985878705978394},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5687999129295349},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.528947114944458},{"id":"https://openalex.org/C2777267654","wikidata":"https://www.wikidata.org/wiki/Q3519023","display_name":"Test (biology)","level":2,"score":0.4957471787929535},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4942221939563751},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4765884578227997},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.448444664478302},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38889408111572266},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3707349896430969},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09278064966201782},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/jamia.2001.0080512","is_oa":true,"landing_page_url":"https://doi.org/10.1136/jamia.2001.0080512","pdf_url":"https://academic.oup.com/jamia/article-pdf/8/5/512/2384902/8-5-512.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:11522772","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11522772","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:1801373","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/131049","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/jamia.2001.0080512","is_oa":true,"landing_page_url":"https://doi.org/10.1136/jamia.2001.0080512","pdf_url":"https://academic.oup.com/jamia/article-pdf/8/5/512/2384902/8-5-512.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109857877.pdf","grobid_xml":"https://content.openalex.org/works/W2109857877.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W24765167","https://openalex.org/W156137717","https://openalex.org/W349354253","https://openalex.org/W1543756077","https://openalex.org/W1739397488","https://openalex.org/W1968968976","https://openalex.org/W2062366800","https://openalex.org/W2159151673","https://openalex.org/W2265087933","https://openalex.org/W2462414450","https://openalex.org/W2471250613","https://openalex.org/W4254165724"],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2340589664","https://openalex.org/W4281750475","https://openalex.org/W3087321790","https://openalex.org/W186091728","https://openalex.org/W2939811865","https://openalex.org/W2079870641","https://openalex.org/W2409065517","https://openalex.org/W206173097"],"abstract_inverted_index":{"To":[0],"the":[1,4,12,30,80,87,99,103,119,129,142,150,154],"Editor:\u2014":[2],"In":[3,124],"recently":[5],"published":[6],"study":[7,97],"by":[8],"Nadkarni":[9],"et":[10],"al.,1":[11],"authors":[13],"used":[14],"text-mining":[15],"software":[16],"to":[17,160],"extract":[18],"concepts":[19,26],"from":[20,52,136,141],"clinical":[21,157],"documents.":[22],"Matching":[23],"of":[24,69,102,128,153,170,176],"these":[25],"was":[27],"attempted":[28],"with":[29],"UMLS":[31],"99":[32],"Metathesaurus.":[33],"Matches":[34],"were":[35,74,116,134],"then":[36],"categorized":[37],"as":[38,76],"true":[39,45],"positives":[40,43,73],"(TP),":[41],"false":[42,49],"(FP),":[44],"negatives":[46,50],"(TN),":[47],"and":[48,59,83,149],"(FN)":[51],"8,745":[53],"terms":[54,61,133,138],"in":[55,62,111],"a":[56,63,67,106,162,174],"\u201ctraining":[57],"set\u201d":[58],"1,701":[60],"\u201ctest":[64],"set,\u201d":[65],"for":[66,79,86],"total":[68],"10,446":[70],"terms.":[71],"True":[72],"reported":[75],"82.6":[77],"percent":[78,85],"training":[81],"set":[82],"76.3":[84],"test":[88],"set.\n\nIn":[89],"1999,":[90],"we":[91],"carried":[92],"out":[93],"an":[94],"almost":[95],"identical":[96,100],"using":[98],"version":[101],"UMLS,":[104],"on":[105],"larger":[107],"scale,":[108],"which":[109],"resulted":[110],"very":[112],"similar":[113],"results":[114],"that":[115],"presented":[117],"at":[118],"1999":[120],"AMIA":[121],"Annual":[122],"Symposium.2":[123],"our":[125],"study,":[126],"4,994":[127],"most":[130],"frequently":[131],"referenced":[132],"chosen":[135],"1,000,000":[137],"randomly":[139],"extracted":[140],"general":[143,163],"Mayo":[144,155,167],"Clinic":[145,156,168],"Master":[146],"Sheet":[147],"Index":[148],"Impression/Report/Plan":[151],"section":[152],"notes":[158],"system,":[159],"form":[161],"medicine":[164],"set.":[165],"The":[166],"Department":[169],"Dermatology":[171],"independently":[172],"developed":[173],"lexicon":[175],"9,050":[177],"\u2026":[178]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
