{"id":"https://openalex.org/W2170133025","doi":"https://doi.org/10.1136/jamia.2000.0070378","title":"Fast Exact String Pattern-matching Algorithms Adapted to the Characteristics of the Medical Language","display_name":"Fast Exact String Pattern-matching Algorithms Adapted to the Characteristics of the Medical Language","publication_year":2000,"publication_date":"2000-07-01","ids":{"openalex":"https://openalex.org/W2170133025","doi":"https://doi.org/10.1136/jamia.2000.0070378","mag":"2170133025","pmid":"https://pubmed.ncbi.nlm.nih.gov/10887166"},"language":"en","primary_location":{"id":"doi:10.1136/jamia.2000.0070378","is_oa":true,"landing_page_url":"https://doi.org/10.1136/jamia.2000.0070378","pdf_url":"https://academic.oup.com/jamia/article-pdf/7/4/378/2109401/7-4-378.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/7/4/378/2109401/7-4-378.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016557721","display_name":"Christian Lovis","orcid":"https://orcid.org/0000-0002-2681-8076"},"institutions":[{"id":"https://openalex.org/I4210094549","display_name":"VA Puget Sound Health Care System","ror":"https://ror.org/00ky3az31","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210094549","https://openalex.org/I4210138024"]},{"id":"https://openalex.org/I4210106256","display_name":"University Hospital of Geneva","ror":"https://ror.org/01m1pv723","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I4210106256"]}],"countries":["CH","US"],"is_corresponding":true,"raw_author_name":"C. Lovis","raw_affiliation_strings":["Puget Sound Health Care System, Seattle, Washington, USA. christian.lovis@dim.hcuge.ch","University Hospital of Geneva, Geneva, Switzerland (RHB)","Affiliations of the authors: Puget Sound Health Care System, Seattle, Washington (CL)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Puget Sound Health Care System, Seattle, Washington, USA. christian.lovis@dim.hcuge.ch","institution_ids":["https://openalex.org/I4210094549"]},{"raw_affiliation_string":"University Hospital of Geneva, Geneva, Switzerland (RHB)","institution_ids":["https://openalex.org/I4210106256"]},{"raw_affiliation_string":"Affiliations of the authors: Puget Sound Health Care System, Seattle, Washington (CL)","institution_ids":["https://openalex.org/I4210094549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074689150","display_name":"Robert Baud","orcid":"https://orcid.org/0009-0002-1709-0439"},"institutions":[{"id":"https://openalex.org/I4210094549","display_name":"VA Puget Sound Health Care System","ror":"https://ror.org/00ky3az31","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210094549","https://openalex.org/I4210138024"]},{"id":"https://openalex.org/I4210106256","display_name":"University Hospital of Geneva","ror":"https://ror.org/01m1pv723","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I4210106256"]}],"countries":["CH","US"],"is_corresponding":false,"raw_author_name":"R. H. Baud","raw_affiliation_strings":["Affiliations of the authors: Puget Sound Health Care System, Seattle, Washington (CL); University Hospital of Geneva, Geneva, Switzerland (RHB)","University Hospital of Geneva, Geneva, Switzerland (RHB)","Affiliations of the authors: Puget Sound Health Care System, Seattle, Washington (CL)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Affiliations of the authors: Puget Sound Health Care System, Seattle, Washington (CL); University Hospital of Geneva, Geneva, Switzerland (RHB)","institution_ids":["https://openalex.org/I4210094549","https://openalex.org/I4210106256"]},{"raw_affiliation_string":"University Hospital of Geneva, Geneva, Switzerland (RHB)","institution_ids":["https://openalex.org/I4210106256"]},{"raw_affiliation_string":"Affiliations of the authors: Puget Sound Health Care System, Seattle, Washington (CL)","institution_ids":["https://openalex.org/I4210094549"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016557721"],"corresponding_institution_ids":["https://openalex.org/I4210094549","https://openalex.org/I4210106256"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.7422,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.91749974,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"4","first_page":"378","last_page":"391"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.16439999639987946,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.16439999639987946,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.13920000195503235,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.1151999980211258,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.8077855706214905},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7836713790893555},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.7316237092018127},{"id":"https://openalex.org/keywords/commentz-walter-algorithm","display_name":"Commentz-Walter algorithm","score":0.7306402325630188},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6756740808486938},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.5823214650154114},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.5746933817863464},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5578243732452393},{"id":"https://openalex.org/keywords/boyer\u2013moore-string-search-algorithm","display_name":"Boyer\u2013Moore string search algorithm","score":0.5029088854789734},{"id":"https://openalex.org/keywords/approximate-string-matching","display_name":"Approximate string matching","score":0.49873948097229004},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.4439281225204468},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4073955714702606},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29213380813598633},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11220875382423401}],"concepts":[{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.8077855706214905},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7836713790893555},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.7316237092018127},{"id":"https://openalex.org/C13052355","wikidata":"https://www.wikidata.org/wiki/Q5152399","display_name":"Commentz-Walter algorithm","level":4,"score":0.7306402325630188},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6756740808486938},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.5823214650154114},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.5746933817863464},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5578243732452393},{"id":"https://openalex.org/C80701825","wikidata":"https://www.wikidata.org/wiki/Q895984","display_name":"Boyer\u2013Moore string search algorithm","level":5,"score":0.5029088854789734},{"id":"https://openalex.org/C32610155","wikidata":"https://www.wikidata.org/wiki/Q1798621","display_name":"Approximate string matching","level":3,"score":0.49873948097229004},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.4439281225204468},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4073955714702606},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29213380813598633},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11220875382423401},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1136/jamia.2000.0070378","is_oa":true,"landing_page_url":"https://doi.org/10.1136/jamia.2000.0070378","pdf_url":"https://academic.oup.com/jamia/article-pdf/7/4/378/2109401/7-4-378.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:10887166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10887166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:doc.rero.ch:295943","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:europepmc.org:164222","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC61442","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:61442","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/61442","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/jamia.2000.0070378","is_oa":true,"landing_page_url":"https://doi.org/10.1136/jamia.2000.0070378","pdf_url":"https://academic.oup.com/jamia/article-pdf/7/4/378/2109401/7-4-378.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170133025.pdf","grobid_xml":"https://content.openalex.org/works/W2170133025.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W36294567","https://openalex.org/W57003163","https://openalex.org/W116323212","https://openalex.org/W161398878","https://openalex.org/W1498252930","https://openalex.org/W1534442584","https://openalex.org/W1545078296","https://openalex.org/W1567440949","https://openalex.org/W1576398758","https://openalex.org/W1633147620","https://openalex.org/W1972418517","https://openalex.org/W1975836848","https://openalex.org/W1976978590","https://openalex.org/W1985108724","https://openalex.org/W1986106281","https://openalex.org/W2012940220","https://openalex.org/W2030333135","https://openalex.org/W2040613463","https://openalex.org/W2112747630","https://openalex.org/W2122689321","https://openalex.org/W2130625618","https://openalex.org/W2134826720"],"related_works":["https://openalex.org/W2141423589","https://openalex.org/W2257399947","https://openalex.org/W4206959305","https://openalex.org/W2359478580","https://openalex.org/W151566426","https://openalex.org/W2108265183","https://openalex.org/W2563743352","https://openalex.org/W2114807473","https://openalex.org/W1982783042","https://openalex.org/W4323060013"],"abstract_inverted_index":{"OBJECTIVE:":[0],"The":[1,36,67,150,178],"authors":[2,68],"consider":[3],"the":[4,21,28,46,73,81,85,106,137,154,173,197,204],"problem":[5],"of":[6,27,38,49,57,75,87,105,108,119,181,200],"exact":[7,89,182],"string":[8,77,90,183],"pattern":[9,184],"matching":[10,185],"using":[11],"algorithms":[12,92,175],"that":[13],"do":[14],"not":[15],"require":[16],"any":[17],"preprocessing.":[18],"To":[19],"choose":[20],"most":[22],"appropriate":[23],"algorithm,":[24],"distinctive":[25],"features":[26],"medical":[29,39,62,124,161],"language":[30,40],"must":[31],"be":[32,187],"taken":[33],"into":[34],"account.":[35],"characteristics":[37],"are":[41,64,93,114,126,142],"emphasized":[42],"in":[43,95,136,203],"this":[44,212],"regard,":[45],"best":[47,155],"algorithm":[48,152,164,193],"those":[50,134],"reviewed":[51],"is":[52,194,209],"proposed,":[53],"and":[54,71,84],"detailed":[55],"evaluations":[56],"time":[58,120,179],"complexity":[59,121],"for":[60],"processing":[61],"texts":[63,125],"provided.":[65],"DESIGN:":[66],"first":[69],"illustrate":[70],"discuss":[72],"techniques":[74,110],"various":[76,109],"pattern-matching":[78,91],"algorithms.":[79],"Next,":[80],"source":[82],"code":[83],"behavior":[86],"representative":[88],"presented":[94],"a":[96],"comprehensive":[97],"manner":[98],"to":[99,111,130],"promote":[100],"their":[101],"implementation.":[102],"Detailed":[103],"explanations":[104],"use":[107],"improve":[112],"performance":[113,180],"given.":[115],"MEASUREMENTS:":[116],"Real-time":[117],"measures":[118],"with":[122,145,160],"English":[123],"presented.":[127],"They":[128],"lead":[129],"results":[131,157],"distinct":[132],"from":[133],"found":[135],"computer":[138],"science":[139],"literature,":[140],"which":[141],"typically":[143],"computed":[144],"normally":[146],"distributed":[147],"texts.":[148,162],"RESULTS:":[149],"Boyer-Moore-Horspool":[151],"achieves":[153],"overall":[156],"when":[158],"used":[159],"This":[163],"usually":[165],"performs":[166],"at":[167],"least":[168],"twice":[169],"as":[170,172],"fast":[171],"other":[174],"tested.":[176],"CONCLUSION:":[177],"can":[186],"greatly":[188],"improved":[189],"if":[190],"an":[191],"efficient":[192,213],"used.":[195],"Considering":[196],"growing":[198],"amount":[199],"text":[201],"handled":[202],"electronic":[205],"patient":[206],"record,":[207],"it":[208],"worth":[210],"implementing":[211],"algorithm.":[214]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
