{"id":"https://openalex.org/W2189022822","doi":"https://doi.org/10.1136/amiajnl-2014-003171","title":"Structuring text and standardizing data for clinical and population health applications","display_name":"Structuring text and standardizing data for clinical and population health applications","publication_year":2014,"publication_date":"2014-08-12","ids":{"openalex":"https://openalex.org/W2189022822","doi":"https://doi.org/10.1136/amiajnl-2014-003171","mag":"2189022822","pmid":"https://pubmed.ncbi.nlm.nih.gov/25117592"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2014-003171","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-003171","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/5/763/5965073/21-5-763.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/21/5/763/5965073/21-5-763.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084415954","display_name":"Lucila Ohno\u2010Machado","orcid":"https://orcid.org/0000-0002-8005-7327"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"L. Ohno-Machado","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5084415954"],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.6358,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.81452368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"21","issue":"5","first_page":"763","last_page":"763"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.907800018787384,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.907800018787384,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.610954999923706},{"id":"https://openalex.org/keywords/structuring","display_name":"Structuring","score":0.6065842509269714},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5945271253585815},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.5480875372886658},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5023586750030518},{"id":"https://openalex.org/keywords/meaningful-use","display_name":"Meaningful use","score":0.4675546884536743},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4666008949279785},{"id":"https://openalex.org/keywords/health-information-technology","display_name":"Health information technology","score":0.44947192072868347},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.43740150332450867},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4356032609939575},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3328781723976135},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.25866198539733887}],"concepts":[{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.610954999923706},{"id":"https://openalex.org/C2775945657","wikidata":"https://www.wikidata.org/wiki/Q381442","display_name":"Structuring","level":2,"score":0.6065842509269714},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5945271253585815},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.5480875372886658},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5023586750030518},{"id":"https://openalex.org/C3019659195","wikidata":"https://www.wikidata.org/wiki/Q5690566","display_name":"Meaningful use","level":3,"score":0.4675546884536743},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4666008949279785},{"id":"https://openalex.org/C2776354556","wikidata":"https://www.wikidata.org/wiki/Q10910281","display_name":"Health information technology","level":3,"score":0.44947192072868347},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.43740150332450867},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4356032609939575},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3328781723976135},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.25866198539733887},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2014-003171","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-003171","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/5/763/5965073/21-5-763.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:25117592","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25117592","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4147604","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4147604","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2014-003171","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-003171","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/5/763/5965073/21-5-763.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2189022822.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2037817819","https://openalex.org/W9475614","https://openalex.org/W1641026212","https://openalex.org/W2049073175","https://openalex.org/W176477701","https://openalex.org/W1834592978","https://openalex.org/W2113832486","https://openalex.org/W2398973086","https://openalex.org/W1595134571","https://openalex.org/W177696842"],"abstract_inverted_index":{"The":[0,125,205],"increasing":[1],"adoption":[2],"of":[3,21,58,75,90,103,181,199,207,222,270,290,303,335,345,359,394,400,463,478,487,510,539,542,561],"Electronic":[4],"Health":[5],"Records":[6],"(EHR)":[7],"systems":[8],"in":[9,14,114,117,123,142,163,196,202,228,251,356,381,521,569],"the":[10,56,73,88,101,179,197,203,220,301,346,392,485,540,559,570],"USA":[11],"has":[12],"resulted":[13],"many":[15],"new":[16],"studies.":[17],"In":[18,267],"this":[19,143,234,268,522,555],"issue":[20,269],"JAMIA,":[22,271],"Krist":[23],"(See":[24,38,65,108,167,173,273,285,297,368,387,406,427,431,435,442,451,459,466,472,481,498,504,516],"page":[25,39,66,109,168,174,274,286,298,369,388,407,428,432,436,443,452,460,467,473,482,499,505,517],"764)":[26],"reports":[27,390,458,465],"on":[28,157,178,282,365,391,439,491],"needed":[29],"functionality":[30],"to":[31,71,96,238,245,261,293,306,351,374,448,531,584],"better":[32],"support":[33,395],"primary":[34],"care,":[35,587],"while":[36],"Feeley":[37],"772)":[40],"describes":[41,276,288,371],"how":[42,533,545],"cancer":[43],"care":[44],"can":[45],"benefit":[46],"from":[47,337,415,456,512,563],"information":[48,227],"technology.":[49],"However,":[50,219],"it":[51,528,546],"is":[52,61,130,340,529,576],"well":[53],"known":[54],"that":[55,79,128,226,263],"quality":[57,74,153],"EHR":[59,76,105,158],"notes":[60,78],"highly":[62],"variable.":[63],"Burke":[64],"910)":[67],"proposes":[68],"an":[69,322,372],"instrument":[70],"assess":[72],"clinical":[77,118,247,317,333,338,469,479],"will":[80,210],"help":[81,422],"make":[82],"comparisons":[83],"across":[84],"providers":[85],"and":[86,98,120,170,186,194,295,361,378,402,404,438,475,507,544,551,566,579,591],"inform":[87],"development":[89],"systems.":[91,106],"We":[92],"are":[93,161,192,243,254,259,265,536,582],"just":[94],"starting":[95],"quantify":[97],"fully":[99],"understand":[100],"limitations":[102],"current":[104],"Hanauer":[107],"925)":[110],"compares":[111],"associations":[112,121],"found":[113,122,162],"structured":[115,217,223,252],"diagnoses":[116,401],"datasets":[119],"Medline.":[124],"study":[126],"reveals":[127],"there":[129],"not":[131,212,255],"much":[132],"concordance":[133],"among":[134],"these":[135],"sources,":[136],"which":[137,176],"calls":[138],"for":[139,149,184,315,326,354,398,494,508],"further":[140],"investigation":[141],"area,":[144],"especially":[145],"since":[146],"electronic":[147,182],"surveillance":[148],"public":[150,552,593],"health":[151,534],"or":[152,332],"improvement":[154],"often":[155],"relies":[156],"data.":[159,218],"Examples":[160],"articles":[164,446],"by":[165,216],"Wang":[166],"938)":[169],"de":[171],"Bruin":[172],"942),":[175],"report":[177],"use":[180,198,355,393],"sources":[183],"tuberculosis":[185],"nosocomial":[187],"infection":[188],"surveillance,":[189],"respectively.":[190],"There":[191],"advantages":[193],"disadvantages":[195],"narrative":[200,208,229,413],"text":[201,209,230,318,414,470,480],"EHR.":[204],"expressiveness":[206],"probably":[211],"ever":[213],"be":[214,231],"achieved":[215],"paucity":[221],"data":[224,250,264,353],"requires":[225],"extracted,":[232],"but":[233],"extraction":[235,450,509],"may":[236],"lead":[237],"significant":[239],"problems":[240],"when":[241],"machines":[242,397],"used":[244],"interpret":[246],"text.":[248],"Additionally,":[249],"fields":[253],"always":[256,320],"standardized.":[257],"Standards":[258],"necessary":[260],"ensure":[262],"computable.":[266],"Savaris":[272],"917)":[275],"a":[277,357,382],"standardized":[278],"storage":[279],"model":[280],"based":[281,490],"DICOM,":[283],"Liou":[284],"792)":[287],"mappings":[289],"laboratory":[291],"terminologies":[292],"LOINC,":[294],"Campbell":[296],"885)":[299],"analyzes":[300],"adequacy":[302],"SNOMED":[304],"CT":[305],"represent":[307],"histopathology":[308],"findings.":[309],"Natural":[310],"language":[311],"processing":[312],"(NLP)":[313],"applications":[314,363,421,489],"structuring":[316],"have":[319],"been":[321],"important":[323],"subject":[324],"area":[325],"JAMIA.":[327],"\u201cPhenotyping\u201d":[328],"(i.e.,":[329],"extracting":[330],"phenotypes":[331],"events":[334,377],"interest":[336],"records)":[339],"fast":[341,578],"developing":[342],"into":[343],"one":[344],"most":[347,362,571],"common":[348],"informatics":[349,580],"interventions":[350],"prepare":[352],"variety":[358],"applications,":[360],"rely":[364],"NLP.":[366],"Solti":[367],"776)":[370],"algorithm":[373],"identify":[375,423],"adverse":[376],"medical":[379,514],"errors":[380],"neonatal":[383],"ICU":[384,416],"setting;":[385],"Marafino":[386],"871)":[389],"vector":[396],"classification":[399,455,462,471],"procedures;":[403],"Abhyankar":[405],"801)":[408],"identifies":[409],"dialysis":[410],"patients":[411,424],"using":[412],"settings.":[417],"Several":[418],"other":[419],"phenotyping":[420],"with":[425],"influenza":[426],"815),":[429],"epilepsy":[430],"866),":[433],"asthma":[434],"876),":[437],"antidepressant":[440],"medication":[441,449],"785).":[444],"Additional":[445],"related":[447],"858),":[453],"lymphoma":[454],"pathology":[457],"824),":[461],"radiology":[464],"893),":[468],"850),":[474],"assisted":[476],"annotation":[477],"833)":[483],"show":[484],"breadth":[486],"NLP":[488],"EHRs.":[492],"Methods":[493],"named":[495],"entity":[496],"recognition":[497,556],"808),":[500],"word":[501],"sense":[502],"disambiguation":[503],"842)":[506],"patterns":[511],"online":[513],"forums":[515],"902)":[518],"also":[519,558],"appear":[520],"issue.":[523],"As":[524],"our":[525],"field":[526],"matures,":[527],"gratifying":[530],"see":[532],"professionals":[535],"increasingly":[537],"aware":[538],"importance":[541],"informatics,":[543],"impacts":[547],"healthcare,":[548],"biomedical":[549,589],"research,":[550,590],"health.":[553,594],"With":[554],"comes":[557],"responsibility":[560],"learning":[562],"past":[564],"lessons":[565],"moving":[567],"ahead":[568],"cost":[572],"effective":[573],"way.":[574],"Healthcare":[575],"changing":[577],"innovations":[581],"critical":[583],"improve":[585],"patient":[586],"accelerate":[588],"promote":[592]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
