{"id":"https://openalex.org/W2119093140","doi":"https://doi.org/10.1136/amiajnl-2014-002954","title":"Assessing the role of a medication-indication resource in the treatment relation extraction from clinical text","display_name":"Assessing the role of a medication-indication resource in the treatment relation extraction from clinical text","publication_year":2014,"publication_date":"2014-10-21","ids":{"openalex":"https://openalex.org/W2119093140","doi":"https://doi.org/10.1136/amiajnl-2014-002954","mag":"2119093140","pmid":"https://pubmed.ncbi.nlm.nih.gov/25336593"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2014-002954","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-002954","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/e1/e162/34146344/amiajnl-2014-002954.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/22/e1/e162/34146344/amiajnl-2014-002954.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Cosmin Adrian Bejan","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cosmin Adrian Bejan","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040262386","display_name":"Wei\u2010Qi Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei-Qi Wei","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070908224","display_name":"Joshua C. Denny","orcid":"https://orcid.org/0000-0002-3049-7332"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua C Denny","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA","Department of Medicine, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Medicine, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.5691,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.6781937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"22","issue":"e1","first_page":"e162","last_page":"e176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9070000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9070000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.07020000368356705,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8901570439338684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6926344633102417},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.575556755065918},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5704187154769897},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5484635233879089},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5177016258239746},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4947659373283386},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.47735142707824707},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4741777181625366},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.4736260771751404},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.45626166462898254},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4556763768196106},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.43899422883987427},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.4284391403198242},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4120021462440491},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3155192732810974},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.27324873208999634},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19637641310691833},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1280672550201416},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.09953394532203674}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8901570439338684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6926344633102417},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.575556755065918},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5704187154769897},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5484635233879089},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5177016258239746},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4947659373283386},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.47735142707824707},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4741777181625366},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.4736260771751404},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.45626166462898254},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4556763768196106},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.43899422883987427},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.4284391403198242},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4120021462440491},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3155192732810974},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.27324873208999634},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19637641310691833},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1280672550201416},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.09953394532203674},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062245","descriptor_name":"RxNorm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2014-002954","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-002954","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/e1/e162/34146344/amiajnl-2014-002954.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:25336593","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25336593","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:4833369","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5901126","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2014-002954","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-002954","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/e1/e162/34146344/amiajnl-2014-002954.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313998","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119093140.pdf","grobid_xml":"https://content.openalex.org/works/W2119093140.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W40421765","https://openalex.org/W96342457","https://openalex.org/W238734946","https://openalex.org/W286875401","https://openalex.org/W1519790527","https://openalex.org/W1538636913","https://openalex.org/W1550258693","https://openalex.org/W1599615952","https://openalex.org/W1614769882","https://openalex.org/W1895358359","https://openalex.org/W2008998978","https://openalex.org/W2012843196","https://openalex.org/W2031614194","https://openalex.org/W2056325010","https://openalex.org/W2098201295","https://openalex.org/W2103427999","https://openalex.org/W2104381725","https://openalex.org/W2111519552","https://openalex.org/W2113952938","https://openalex.org/W2121111666","https://openalex.org/W2121399461","https://openalex.org/W2124065599","https://openalex.org/W2129367118","https://openalex.org/W2136127280","https://openalex.org/W2142071150","https://openalex.org/W2142572836","https://openalex.org/W2153658404","https://openalex.org/W2155830721","https://openalex.org/W2159721973","https://openalex.org/W2165456953","https://openalex.org/W2166861608","https://openalex.org/W2168041406","https://openalex.org/W2989631226","https://openalex.org/W4300450573","https://openalex.org/W6600347082","https://openalex.org/W6601678811","https://openalex.org/W6603808517","https://openalex.org/W6609076370","https://openalex.org/W6632177641","https://openalex.org/W6632766574","https://openalex.org/W6635812994","https://openalex.org/W6636232537","https://openalex.org/W6639760991","https://openalex.org/W6664703033","https://openalex.org/W6675616163"],"related_works":["https://openalex.org/W2393185060","https://openalex.org/W2340589664","https://openalex.org/W2114373757","https://openalex.org/W2069107439","https://openalex.org/W2101373085","https://openalex.org/W4230132391","https://openalex.org/W1517188135","https://openalex.org/W2394915338","https://openalex.org/W1639036690","https://openalex.org/W2402651679"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"evaluate":[2],"the":[3,6,32,40,92,97,116,123,161,166,171,175,180,183,189,193,196,207,212,215,227,231,242,301],"contribution":[4],"of":[5,94,111,147,159,195,244,273,287],"MEDication":[7],"Indication":[8],"(MEDI)":[9],"resource":[10],"and":[11,39,81,96,115,122,174,192,200,221,255,300],"SemRep":[12,29,95,208,254,274,299],"for":[13,119],"identifying":[14],"treatment":[15,41,55,138,262,307],"relations":[16,42,56,148,164,167,246,263],"in":[17,66,230,250],"clinical":[18,26,265,311],"text.":[19,266,312],"MATERIALS":[20],"AND":[21],"METHODS:":[22],"We":[23,84,100],"first":[24,181],"processed":[25],"documents":[27],"with":[28,149,165,247,269],"to":[30,260],"extract":[31,261],"Unified":[33],"Medical":[34],"Language":[35],"System":[36],"(UMLS)":[37],"concepts":[38,59],"between":[43,57],"them.":[44],"Then,":[45],"we":[46,73],"incorporated":[47],"MEDI":[48,75,98,172,190,216,256,270,292],"into":[49,293],"a":[50,63,70,108],"simple":[51],"algorithm":[52,191,217],"that":[53],"identifies":[54],"two":[58,87,106,176,197,235],"if":[60],"they":[61],"match":[62],"medication-indication":[64],"pair":[65],"this":[67],"resource.":[68],"For":[69],"better":[71,219],"coverage,":[72],"expanded":[74],"using":[76],"ontology":[77],"relationships":[78],"from":[79,264,310],"RxNorm":[80],"UMLS":[82],"Metathesaurus.":[83],"also":[85],"developed":[86],"ensemble":[88,177],"methods,":[89],"which":[90],"combined":[91],"predictions":[93],"algorithm.":[99],"evaluated":[101],"our":[102],"selected":[103],"methods":[104],"on":[105,145,241],"datasets,":[107],"Vanderbilt":[109,132],"corpus":[110],"6864":[112],"discharge":[113],"summaries":[114],"2010":[117],"Informatics":[118],"Integrating":[120],"Biology":[121],"Bedside":[124],"(i2b2)/Veteran's":[125],"Affairs":[126],"(VA)":[127],"challenge":[128],"dataset.":[129],"RESULTS:":[130],"The":[131,156,234,285],"dataset":[133],"included":[134],"958":[135],"manually":[136],"annotated":[137,163],"relations.":[139],"A":[140],"double":[141],"annotation":[142],"was":[143,279],"performed":[144],"25%":[146],"high":[150],"agreement":[151],"(Cohen's":[152],"\u03ba":[153],"=":[154],"0.86).":[155],"evaluation":[157],"consisted":[158],"comparing":[160],"manual":[162],"identified":[168],"by":[169,188,281],"SemRep,":[170],"algorithm,":[173],"methods.":[178],"On":[179,211],"dataset,":[182,214],"best":[184,228],"F1-measure":[185,239],"results":[186,209],"achieved":[187,218,280],"union":[194],"resources":[198,289],"(78.7":[199],"80,":[201],"respectively)":[202],"were":[203],"significantly":[204,222],"higher":[205],"than":[206,226],"(72.3).":[210],"second":[213],"precision":[220],"lower":[223],"recall":[224],"values":[225,240],"system":[229],"i2b2":[232,245,302],"challenge.":[233],"systems":[236,296],"obtained":[237],"comparable":[238],"subset":[243],"both":[248,283],"arguments":[249],"MEDI.":[251],"CONCLUSIONS:":[252],"Both":[253],"can":[257],"be":[258],"used":[259],"Knowledge-based":[267],"extraction":[268,295,309],"outperformed":[271],"use":[272],"alone,":[275],"but":[276],"superior":[277],"performance":[278],"integrating":[282],"systems.":[284],"integration":[286],"knowledge-based":[288],"such":[290,297],"as":[291,298],"information":[294],"relation":[303,308],"extractors":[304],"may":[305],"improve":[306]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
