{"id":"https://openalex.org/W1596932914","doi":"https://doi.org/10.1136/amiajnl-2014-002902","title":"Functional evaluation of out-of-the-box text-mining tools for data-mining tasks","display_name":"Functional evaluation of out-of-the-box text-mining tools for data-mining tasks","publication_year":2014,"publication_date":"2014-10-21","ids":{"openalex":"https://openalex.org/W1596932914","doi":"https://doi.org/10.1136/amiajnl-2014-002902","mag":"1596932914","pmid":"https://pubmed.ncbi.nlm.nih.gov/25336595"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2014-002902","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-002902","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/121/34145305/amiajnl-2014-002902.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/22/1/121/34145305/amiajnl-2014-002902.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102792254","display_name":"Kenneth Jung","orcid":"https://orcid.org/0000-0001-8203-2513"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kenneth Jung","raw_affiliation_strings":["Program in Biomedical Informatics, Stanford University, Stanford, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Biomedical Informatics, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059906626","display_name":"Paea LePendu","orcid":"https://orcid.org/0000-0001-7358-931X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paea LePendu","raw_affiliation_strings":["Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088004913","display_name":"Srinivasan Iyer","orcid":"https://orcid.org/0000-0002-6186-2603"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivasan Iyer","raw_affiliation_strings":["Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030710827","display_name":"Anna Bauer\u2010Mehren","orcid":"https://orcid.org/0000-0001-8905-9161"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Bauer-Mehren","raw_affiliation_strings":["Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032838430","display_name":"Bethany Percha","orcid":"https://orcid.org/0000-0003-0988-4183"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bethany Percha","raw_affiliation_strings":["Program in Biomedical Informatics, Stanford University, Stanford, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Biomedical Informatics, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam H Shah","raw_affiliation_strings":["Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA;","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5102792254"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":2.079,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.86685566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"121","last_page":"131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7857999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7857999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.053599998354911804,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.03620000183582306,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.813605546951294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.625983476638794},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5986103415489197},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5123177766799927},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4839056432247162}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.813605546951294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.625983476638794},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5986103415489197},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5123177766799927},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4839056432247162},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1136/amiajnl-2014-002902","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-002902","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/121/34145305/amiajnl-2014-002902.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:25336595","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25336595","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:3670621","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4433377","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6x61k90q","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/6x61k90q","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA, vol 22, iss 1","raw_type":"article"},{"id":"pmh:qt6x61k90q","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/6x61k90q","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jung, K; LePendu, P; Iyer, S; Bauer-Mehren, A; Percha, B; &amp; Shah, NH. (2015). Functional evaluation of out-of-the-box text-mining tools for data-mining tasks. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 22(1), 121 - 131. doi: 10.1136/amiajnl-2014-002902. UC Riverside: Retrieved from: http://www.escholarship.org/uc/item/6x61k90q","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2014-002902","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2014-002902","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/121/34145305/amiajnl-2014-002902.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G1362058311","display_name":null,"funder_award_id":"R01 GM101430","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2225135173","display_name":null,"funder_award_id":"U54 HG004028","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2356014100","display_name":null,"funder_award_id":"R01 LM011369","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G407050446","display_name":null,"funder_award_id":"T15LM 007033","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7529942499","display_name":null,"funder_award_id":"HG004028","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G8000693649","display_name":null,"funder_award_id":"GM101430","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1596932914.pdf","grobid_xml":"https://content.openalex.org/works/W1596932914.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W45588658","https://openalex.org/W55193321","https://openalex.org/W91361357","https://openalex.org/W100833113","https://openalex.org/W102787101","https://openalex.org/W246808545","https://openalex.org/W1487381889","https://openalex.org/W1512404644","https://openalex.org/W1569856620","https://openalex.org/W1594888675","https://openalex.org/W1637593105","https://openalex.org/W1934602670","https://openalex.org/W1969208427","https://openalex.org/W1983141380","https://openalex.org/W1990467158","https://openalex.org/W1991567209","https://openalex.org/W2003999719","https://openalex.org/W2004910511","https://openalex.org/W2007138823","https://openalex.org/W2009790391","https://openalex.org/W2012487908","https://openalex.org/W2013355692","https://openalex.org/W2013770071","https://openalex.org/W2029592334","https://openalex.org/W2040555718","https://openalex.org/W2055417936","https://openalex.org/W2082302018","https://openalex.org/W2099188065","https://openalex.org/W2101374419","https://openalex.org/W2103018059","https://openalex.org/W2104381725","https://openalex.org/W2106797966","https://openalex.org/W2112656327","https://openalex.org/W2114388055","https://openalex.org/W2114668172","https://openalex.org/W2115259143","https://openalex.org/W2124994452","https://openalex.org/W2131660156","https://openalex.org/W2132724073","https://openalex.org/W2135136011","https://openalex.org/W2137052779","https://openalex.org/W2139542062","https://openalex.org/W2139865360","https://openalex.org/W2142136061","https://openalex.org/W2146089916","https://openalex.org/W2151068025","https://openalex.org/W2151636613","https://openalex.org/W2154048976","https://openalex.org/W2159583324","https://openalex.org/W2160194473","https://openalex.org/W2164205487","https://openalex.org/W2168041406","https://openalex.org/W2168528736","https://openalex.org/W2169818249","https://openalex.org/W2171548451","https://openalex.org/W2182748314","https://openalex.org/W2232325453","https://openalex.org/W2328176404","https://openalex.org/W4381594492","https://openalex.org/W6601855197","https://openalex.org/W6602254721","https://openalex.org/W6603660159","https://openalex.org/W6604181502","https://openalex.org/W6609383131","https://openalex.org/W6630546887","https://openalex.org/W6635343491","https://openalex.org/W6636672007","https://openalex.org/W6648125241","https://openalex.org/W6652918777"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3209574120","https://openalex.org/W3107602296","https://openalex.org/W4312192474","https://openalex.org/W4210805261","https://openalex.org/W4387297750"],"abstract_inverted_index":{"OBJECTIVE:":[0],"The":[1],"trade-off":[2,40],"between":[3,49,80,146],"the":[4,13,88,91,104,112,123,133,148,154,157,207,217],"speed":[5,50],"and":[6,12,51,76,82,94,115,131,151],"simplicity":[7],"of":[8,28,58,69,90,156,179,187,209,219,230],"dictionary-based":[9,204,221],"term":[10,183],"recognition":[11,184],"richer":[14],"linguistic":[15,52],"information":[16],"provided":[17],"by":[18],"more":[19],"advanced":[20,188],"natural":[21],"language":[22],"processing":[23,43],"(NLP)":[24],"is":[25,142],"an":[26],"area":[27],"active":[29],"discussion":[30],"in":[31,60,96,153,192,232],"clinical":[32,62,120],"informatics.":[33],"In":[34,165],"this":[35,39],"paper,":[36],"we":[37],"quantify":[38],"among":[41],"text":[42],"systems":[44,59],"that":[45],"make":[46],"different":[47],"trade-offs":[48],"understanding.":[53],"We":[54,85,109],"tested":[55],"both":[56],"types":[57],"three":[61,137,158],"research":[63,138,159],"tasks:":[64],"phase":[65],"IV":[66],"safety":[67],"profiling":[68],"a":[70,97,177],"drug,":[71],"learning":[72,77],"adverse":[73],"drug-drug":[74],"interactions,":[75],"used-to-treat":[78],"relationships":[79],"drugs":[81],"indications.":[83],"MATERIALS:":[84],"first":[86],"benchmarked":[87],"accuracy":[89,198],"NCBO":[92,113,149],"Annotator":[93,114,150],"REVEAL":[95,116,152,168],"manually":[98],"annotated,":[99],"publically":[100],"available":[101],"dataset":[102],"from":[103,122],"2008":[105],"i2b2":[106],"Obesity":[107],"Challenge.":[108],"then":[110],"applied":[111],"to":[117,212],"9":[118],"million":[119],"notes":[121],"Stanford":[124],"Translational":[125],"Research":[126],"Integrated":[127],"Database":[128],"Environment":[129],"(STRIDE)":[130],"used":[132],"resulting":[134],"data":[135],"for":[136,223],"tasks.":[139],"RESULTS:":[140],"There":[141],"no":[143,195],"significant":[144],"difference":[145],"using":[147,162,200],"results":[155,191],"tasks":[160],"when":[161,199],"large":[163,201,214],"datasets.":[164,174,202,215],"one":[166],"subtask,":[167],"achieved":[169],"higher":[170],"sensitivity":[171],"with":[172],"smaller":[173],"CONCLUSIONS:":[175],"For":[176],"variety":[178],"tasks,":[180],"employing":[181],"simple":[182],"methods":[185,190,205,222],"instead":[186],"NLP":[189,231],"little":[193],"or":[194],"impact":[196],"on":[197],"Simpler":[203],"have":[206],"advantage":[208],"scaling":[210],"well":[211],"very":[213],"Promoting":[216],"use":[218],"simple,":[220],"population":[224],"level":[225],"analyses":[226],"can":[227],"advance":[228],"adoption":[229],"practice.":[233]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":3}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
