{"id":"https://openalex.org/W2161693184","doi":"https://doi.org/10.1136/amiajnl-2013-002577","title":"BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing","display_name":"BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing","publication_year":2014,"publication_date":"2014-10-31","ids":{"openalex":"https://openalex.org/W2161693184","doi":"https://doi.org/10.1136/amiajnl-2013-002577","mag":"2161693184","pmid":"https://pubmed.ncbi.nlm.nih.gov/25361575"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-002577","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002577","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/65/34145160/amiajnl-2013-002577.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/22/1/65/34145160/amiajnl-2013-002577.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074082034","display_name":"Chao Pang","orcid":"https://orcid.org/0000-0001-9308-8790"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Chao Pang","raw_affiliation_strings":["Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087133067","display_name":"Dennis Hendriksen","orcid":"https://orcid.org/0000-0003-0417-625X"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Dennis Hendriksen","raw_affiliation_strings":["Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002999145","display_name":"Martijn Dijkstra","orcid":"https://orcid.org/0000-0001-8345-8196"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martijn Dijkstra","raw_affiliation_strings":["Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033039802","display_name":"K. Joeri van der Velde","orcid":"https://orcid.org/0000-0002-0934-8375"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"K Joeri van der Velde","raw_affiliation_strings":["Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","Groningen Bioinformatics Center, University of Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Groningen Bioinformatics Center, University of Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007372167","display_name":"Jo\u00ebl Kuiper","orcid":"https://orcid.org/0000-0001-7190-542X"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Joel Kuiper","raw_affiliation_strings":["Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033537614","display_name":"Hans L. Hillege","orcid":"https://orcid.org/0000-0001-7397-1148"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hans L Hillege","raw_affiliation_strings":["Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Morris A Swertz","raw_affiliation_strings":["Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","Groningen Bioinformatics Center, University of Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Groningen Bioinformatics Center, University of Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074082034"],"corresponding_institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":1.5356,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.82765364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"65","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.536899983882904,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.536899983882904,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.15399999916553497,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.08150000125169754,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.8208073377609253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8164945840835571},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6785341501235962},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5781207084655762},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5733219385147095},{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.5674336552619934},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5572978258132935},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5347726941108704},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.5269399881362915},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5261737108230591},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.5096909999847412},{"id":"https://openalex.org/keywords/compendium","display_name":"Compendium","score":0.5032925009727478},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.47666552662849426},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.45728084444999695},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.44416987895965576},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1938459277153015},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17018842697143555},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09589815139770508}],"concepts":[{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.8208073377609253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8164945840835571},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6785341501235962},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5781207084655762},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5733219385147095},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.5674336552619934},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5572978258132935},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5347726941108704},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.5269399881362915},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5261737108230591},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.5096909999847412},{"id":"https://openalex.org/C2778473407","wikidata":"https://www.wikidata.org/wiki/Q1459574","display_name":"Compendium","level":2,"score":0.5032925009727478},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.47666552662849426},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.45728084444999695},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.44416987895965576},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1938459277153015},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17018842697143555},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09589815139770508},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1136/amiajnl-2013-002577","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002577","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/65/34145160/amiajnl-2013-002577.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:25361575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25361575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pure.rug.nl:openaire/df1aa601-99f9-4bc5-8795-a1af79d0de38","is_oa":false,"landing_page_url":"https://research.rug.nl/en/publications/df1aa601-99f9-4bc5-8795-a1af79d0de38","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pang, C, Hendriksen, D, Dijkstra, M, van der Velde, K J, Kuiper, J, Hillege, H L & Swertz, M A 2015, 'BiobankConnect : software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing', Journal of the American Medical Informatics Association, vol. 22, no. 1, pp. 65-75. https://doi.org/10.1136/amiajnl-2013-002577","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:3670605","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4433361","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-002577","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002577","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/65/34145160/amiajnl-2013-002577.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4402520198","display_name":"Biobank Standardisation and Harmonisation for Research Excellence in the European Union","funder_award_id":"261433","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7546909933","display_name":"Building data bridges between biological and medical infrastructures in Europe","funder_award_id":"284209","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161693184.pdf","grobid_xml":"https://content.openalex.org/works/W2161693184.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1481690646","https://openalex.org/W1540874816","https://openalex.org/W1578881253","https://openalex.org/W1894406166","https://openalex.org/W2006453420","https://openalex.org/W2007226769","https://openalex.org/W2060490235","https://openalex.org/W2091729411","https://openalex.org/W2098592714","https://openalex.org/W2103017472","https://openalex.org/W2103591418","https://openalex.org/W2117662116","https://openalex.org/W2117815774","https://openalex.org/W2118147999","https://openalex.org/W2119053385","https://openalex.org/W2131660156","https://openalex.org/W2132784310","https://openalex.org/W2140354722","https://openalex.org/W2143844589","https://openalex.org/W2611894836","https://openalex.org/W2914271914","https://openalex.org/W4241410814","https://openalex.org/W6639646473","https://openalex.org/W6681211017"],"related_works":["https://openalex.org/W92848257","https://openalex.org/W2376314740","https://openalex.org/W2963003682","https://openalex.org/W1490985947","https://openalex.org/W1495631295","https://openalex.org/W4249836580","https://openalex.org/W3140834074","https://openalex.org/W2087742606","https://openalex.org/W2894024364","https://openalex.org/W2161693184"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Pooling":[1],"data":[2,20,26,39,55,66,133,223],"across":[3],"biobanks":[4],"is":[5,43],"necessary":[6],"to":[7,62,68,156,192,205],"increase":[8],"statistical":[9],"power,":[10],"reveal":[11],"more":[12],"subtle":[13],"associations,":[14],"and":[15,34,41,45,92,110,149,176],"synergize":[16],"the":[17,29,74,85,178,190,209,226],"value":[18],"of":[19,31,161,183,221],"sources.":[21],"However,":[22],"searching":[23,99,129],"for":[24,87,102,130,218],"desired":[25,65,75,132],"elements":[27,33,67,70,76,89,101,134,138],"among":[28],"thousands":[30],"available":[32,69,100,137,242],"harmonizing":[35],"differences":[36],"in":[37,135,174,177,181],"terminology,":[38],"collection,":[40],"structure,":[42],"arduous":[44],"time":[46],"consuming.":[47],"MATERIALS":[48],"AND":[49],"METHODS:":[50],"To":[51],"speed":[52,207],"up":[53,208],"biobank":[54,210],"pooling":[56],"we":[57],"developed":[58],"BiobankConnect,":[59],"a":[60,157,232,240],"system":[61,188],"semi-automatically":[63],"match":[64],"by:":[71],"(1)":[72],"annotating":[73],"with":[77,90,239],"ontology":[78],"terms":[79,105],"using":[80,95,106,123],"BioPortal;":[81],"(2)":[82],"automatically":[83,98],"expanding":[84],"query":[86],"these":[88,103],"synonyms":[91],"subclass":[93],"information":[94],"OntoCAT;":[96],"(3)":[97],"expanded":[104],"Lucene":[107],"lexical":[108],"matching;":[109],"(4)":[111],"shortlisting":[112],"relevant":[113,162],"matches":[114,126,167],"sorted":[115],"by":[116,169],"matching":[117,196],"score.":[118],"RESULTS:":[119],"We":[120,142],"evaluated":[121],"BiobankConnect":[122,199],"human":[124],"curated":[125,159],"from":[127,139,237],"EU-BioSHaRE,":[128],"32":[131],"7461":[136],"six":[140],"biobanks.":[141],"found":[143],"0.75":[144],"precision":[145],"at":[146,152,243],"rank":[147,153],"1":[148],"0.74":[150],"recall":[151],"10":[154,180],"compared":[155],"manually":[158],"set":[160],"matches.":[163],"In":[164],"addition,":[165],"best":[166],"chosen":[168],"BioSHaRE":[170],"experts":[171],"ranked":[172],"first":[173],"63.0%":[175],"top":[179],"98.4%":[182],"cases,":[184],"indicating":[185],"that":[186],"our":[187],"has":[189],"potential":[191],"significantly":[193,206],"reduce":[194],"manual":[195],"work.":[197],"CONCLUSIONS:":[198],"provides":[200],"an":[201],"easy":[202],"user":[203],"interface":[204],"harmonization":[211],"process.":[212],"It":[213],"may":[214],"also":[215],"prove":[216],"useful":[217],"other":[219],"forms":[220],"biomedical":[222],"integration.":[224],"All":[225],"software":[227],"can":[228],"be":[229],"downloaded":[230],"as":[231],"MOLGENIS":[233],"open":[234],"source":[235],"app":[236],"http://www.github.com/molgenis,":[238],"demo":[241],"http://www.biobankconnect.org.":[244]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}